Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 556 a.a., putative sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  747 bits (1929), Expect = 0.0
 Identities = 391/554 (70%), Positives = 450/554 (81%), Gaps = 1/554 (0%)

Query: 1   MPKPSDDQHQALTQLLGFGSHSARKSHYPELVARLEELEAERNRYKWLFEHAVHGIFQAS 60
           M +PSD+Q +AL  LLG G HSARKSHYPEL ARL+ELEAERNRYKWLFE+AVHGIFQAS
Sbjct: 1   MARPSDEQQRALAGLLGLGDHSARKSHYPELSARLDELEAERNRYKWLFENAVHGIFQAS 60

Query: 61  LQEGIRAANPALARMLGYETAEDALWTLTDLSHHLFIGGEEELRQIRHTLSQQNGLFGYE 120
           LQ+G+RAANPALARMLGY+  +  L++LTDL+ +LF GG EEL+ I   L++++ L GYE
Sbjct: 61  LQDGMRAANPALARMLGYDDPQAVLFSLTDLAANLFDGGAEELQAITAVLAREHSLHGYE 120

Query: 121 TRLRRKDGSAIYVIMNLLLKPDEDGLVEGFVADVTERKLAQLRLLQLNEELEQRVAERTC 180
           TRLRRKDGS + V+MNLLLKP  +GLVEGFVAD+TERKLAQ RL QLN+ELEQRVA RT 
Sbjct: 121 TRLRRKDGSHLDVLMNLLLKPGHEGLVEGFVADITERKLAQQRLQQLNDELEQRVAARTD 180

Query: 181 ELREARDAAEAANLSKDKYLAAASHDLLQPLNAARLLISTLRERQLPQSELHLVERAHLA 240
           EL EARDAAEAAN SKDKYLAAASHDLLQPLNAARLLISTLRER LP++E  LVER H A
Sbjct: 181 ELLEARDAAEAANRSKDKYLAAASHDLLQPLNAARLLISTLRERPLPEAEHVLVERTHQA 240

Query: 241 LEGAEDLLTDLLDISKLDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRC 300
           LEGAEDLLTDLLDIS+LDQAA+KPD+  Y LD++  PL+SEF PVA A GL+L   +   
Sbjct: 241 LEGAEDLLTDLLDISRLDQAAVKPDVAVYRLDELFAPLVSEFSPVAEAAGLKLHARIADY 300

Query: 301 AISCDFRLLTRILRNLLSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIF 360
           AIS D RLLTRILRN LSNACRYT+ G +LLGAR+RG  LR+EVWDTGRGI ++ L  IF
Sbjct: 301 AISTDLRLLTRILRNFLSNACRYTEEGRILLGARRRGGHLRLEVWDTGRGIAQDRLQDIF 360

Query: 361 LEFNQLGVSRAAERSGVGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPR 420
           LEFNQL V RAA+R GVGLGLAIV+RIA +L YR+ VRS  GRGSVFSI+VP+   V P 
Sbjct: 361 LEFNQLDVGRAADRKGVGLGLAIVERIAKILGYRIEVRSWLGRGSVFSIEVPLGKEV-PL 419

Query: 421 SAVTPVIAPQLGDPLPGRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALGGV 480
           +    V  P +GDPLPGRRLLV+DNE SIL SM ALL QWGC VVTATD + A+ AL G 
Sbjct: 420 AVHQAVPLPSVGDPLPGRRLLVLDNEVSILESMGALLGQWGCEVVTATDREGALLALQGR 479

Query: 481 APDAILADYHLDHGSTGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKP 540
           AP+ ILADYHLDHG  G +VV  LR  F+T +P V+ITADRSDQCRR LQ +G P+LNKP
Sbjct: 480 APELILADYHLDHGVVGCEVVRYLREHFATAIPAVIITADRSDQCRRGLQKLGAPLLNKP 539

Query: 541 VKPGKMRSVLSHLL 554
           VKPGK+R+VLS LL
Sbjct: 540 VKPGKLRAVLSQLL 553