Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 632 a.a., putative hybrid sensor and regulator, histidine kinase from Pseudomonas putida KT2440

 Score =  328 bits (842), Expect = 3e-94
 Identities = 189/428 (44%), Positives = 265/428 (61%), Gaps = 24/428 (5%)

Query: 151 VADVTERKLAQLRLLQLNEELEQRVAERTCEL---------------------REARDAA 189
           + D+TER+     L Q  + LEQRV ERT EL                     REA+  A
Sbjct: 202 IRDITERRNTAQALHQAYQHLEQRVRERTAELTSLNDQLLREIEERSQAESRLREAKREA 261

Query: 190 EAANLSKDKYLAAASHDLLQPLNAARLLISTLRERQLPQSELHLVERAHLALEGAEDLLT 249
           E ANLSK K+LAA SHDLLQPLNAARL  S L ER  PQ+  HLV     +LE  E+LL 
Sbjct: 262 EQANLSKTKFLAAVSHDLLQPLNAARLFTSALLERDEPQNAAHLVRNVSNSLEDVENLLG 321

Query: 250 DLLDISKLDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLL 309
            L+DISKLD   IK D+  ++L +++  L +E+  VA ++GL+L        +  D +LL
Sbjct: 322 TLVDISKLDAGVIKADVAPFALHELMDNLAAEYVQVARSEGLELHFVGCSAVVRSDIQLL 381

Query: 310 TRILRNLLSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVS 369
            RILRNLLSNA RYT +G V+LG R+    +RIEVWD+G GI EE L  +FLEF +  V 
Sbjct: 382 ARILRNLLSNAIRYTPSGRVVLGCRRLRGGVRIEVWDSGIGIAEEHLQDMFLEFKRGDVQ 441

Query: 370 RAAERSGVGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSAVTPVIAP 429
           R  +  G+GLGLAIV++IA +L +R+ VRS  G+GSVF+++VP++ T  P++  + VI  
Sbjct: 442 RPDQDRGLGLGLAIVEKIAGILGHRIRVRSWLGKGSVFAVEVPLSTTA-PKAQPSQVICE 500

Query: 430 QLGDPLPGRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALGGVAPDA--ILA 487
            + + L G R+ V+DN+ +I   M  LLE WGC VVTA  E+     +     DA  ++A
Sbjct: 501 PMLERLRGARVWVLDNDAAICAGMRTLLEGWGCRVVTALSEEDLARQVDNYHADADLLIA 560

Query: 488 DYHLDHGSTGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMR 547
           DYHLD+   G D V  + AR +  LP +MIT + S+  ++Q++ +G  +++KPV+P K++
Sbjct: 561 DYHLDNDCNGVDAVARINARRAQPLPALMITVNYSNDLKQQIRELGHTLMHKPVRPMKLK 620

Query: 548 SVLSHLLS 555
           + +SHLL+
Sbjct: 621 TAMSHLLA 628