Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1159 a.a., putative Sodium-solute symporter/sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

 Score =  288 bits (737), Expect = 8e-82
 Identities = 177/420 (42%), Positives = 252/420 (60%), Gaps = 16/420 (3%)

Query: 149  GFV---ADVTERKLAQLRLLQLNEELEQRVAERTCELR-------EARDAAEAANLSKDK 198
            GFV    D+T  + A+  L   NE LEQRVAERT EL        EA+  AEA + SK +
Sbjct: 740  GFVMSFTDITPFREAEQALRDANERLEQRVAERTHELSQLNQALSEAKSQAEAVSNSKTR 799

Query: 199  YLAAASHDLLQPLNAARLLISTLRERQLPQSE--LHLVERAHLALEGAEDLLTDLLDISK 256
            +LAA SHDL+QPLNAARL  + L ++    +E    LV+    +L  AE+L++DLLDIS+
Sbjct: 800  FLAAVSHDLMQPLNAARLFSAALSQQAEGMNEEARQLVQHMDSSLRSAEELISDLLDISR 859

Query: 257  LDQAAIKPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLPRCAISCDFRLLTRILRNL 316
            L+   I PD   ++L+++   L +EF+ +AA KGL+      R  +  D +LL R+L+N 
Sbjct: 860  LENGKITPDAKPFALNELFDTLGAEFKLLAAEKGLEFRLRGSRLRVDSDMKLLRRVLQNF 919

Query: 317  LSNACRYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSG 376
            L+NA RY  +  +LLGAR++G+ L +EVWD G GI ++ L  IF EF +L   +     G
Sbjct: 920  LTNALRYGKSP-ILLGARRQGERLWLEVWDRGPGIADDKLQVIFQEFKRLDSHQTRAEKG 978

Query: 377  VGLGLAIVDRIANMLDYRVLVRSRPGRGSVFSIDVPMAATVPPRSAVTPVIAPQLGDPLP 436
            +GLGLAI D +  +L + + VRS PG+G+VF + VP+A      +A +  +  Q G PL 
Sbjct: 979  LGLGLAIADGLCRVLGHPLEVRSWPGKGTVFRVSVPIARQA--AAAPSTPVEQQGGQPLA 1036

Query: 437  GRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALG-GVAPDAILADYHLDHGS 495
            G ++L +DNE SIL  M +LL +WGC V TA ++    A L  G+ P   L DYHLD G 
Sbjct: 1037 GLQVLCVDNEDSILIGMNSLLSRWGCQVWTARNQAECEALLAKGMRPHLALVDYHLDDGE 1096

Query: 496  TGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMRSVLSHLLS 555
            TG  ++  LRAR    +P V+I+AD S +    +   G+  L KPVKP  +R++L+  LS
Sbjct: 1097 TGTGLMGWLRARLGEPVPGVVISADGSKETIALVHASGLDYLAKPVKPAALRALLNRHLS 1156