Pairwise Alignments

Query, 565 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 553 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

 Score =  248 bits (634), Expect = 3e-70
 Identities = 166/428 (38%), Positives = 231/428 (53%), Gaps = 31/428 (7%)

Query: 146 LVEGFVADVTERKLAQLRLLQLNEELEQRVAERTCELREARDAAEAANLSKDKYLAAASH 205
           LV+G V  V         + Q+ E +   VA  T               ++ ++LA+ASH
Sbjct: 144 LVDGRVVGVLATATLDGAIAQMAETMRAEVARTTA--------------ARSRFLASASH 189

Query: 206 DLLQPLNAARLLISTLRERQLPQSELHLVERAHL---ALEGAEDLLTDLLDISKLDQAAI 262
           DL QP  A RL +  L  +   +        A +   A+   E LL  LLDIS LD   +
Sbjct: 190 DLRQPFQAMRLFLDALTNQV--EGNARASRTAGMLANAMTAGEQLLNALLDISTLDAGTV 247

Query: 263 KPDIDAYSLDDILLPLISEFQPVAAAKGLQLSHYLP-RCAISCDFRLLTRILRNLLSNAC 321
           + D+ A  LD +L  L  EF+P A  KGL+L  +LP R     D  LL RI+RNLL+NA 
Sbjct: 248 EADLQAVPLDALLQSLADEFRPQAEEKGLRLRVHLPCRAVTRSDPVLLGRIVRNLLANAI 307

Query: 322 RYTDAGGVLLGARKRGDMLRIEVWDTGRGIPEEDLHSIFLEFNQLGVSRAAERSGVGLGL 381
           RYT  GG+LLG RKR    RIEVWDTG GIP++ L  IF EF+QL         G+GLGL
Sbjct: 308 RYTQRGGILLGLRKRDGRWRIEVWDTGFGIPQDKLDVIFDEFHQLTNPARDPTRGLGLGL 367

Query: 382 AIVDRIANMLDYRVLVRSRPGRGSVFSIDVP-MAATVPPRSAVTPVIAPQLGD-----PL 435
           AIV R++ +L   + V+SR GRGSVF++ V  + A   P  A  P +A   G      PL
Sbjct: 368 AIVRRLSVLLSAPIDVQSRSGRGSVFAVTVERLEAEEAPADA--PAVAASAGQGAAAVPL 425

Query: 436 PGRRLLVIDNETSILHSMAALLEQWGCTVVTATDEQTAIAALGGV--APDAILADYHLDH 493
            G R+LV+D+++ +L  +   LE WGC  V+A++ +   AA+ G+   PDAIL D  L  
Sbjct: 426 DGMRILVVDDDSMVLSGLLLTLESWGCAFVSASNMREVFAAVDGLEGPPDAILTDLRLPG 485

Query: 494 GSTGWDVVLALRARFSTRLPVVMITADRSDQCRRQLQGVGVPVLNKPVKPGKMRSVLSHL 553
             +G+DV+  +R  F T +P V++T + + +   + Q  G   L+KP+ PG +R VL   
Sbjct: 486 KVSGFDVIDRVRKLFKTDIPAVVLTGETAPESLLEGQRRGCAFLHKPLHPGDLRRVLEE- 544

Query: 554 LSGDGTDG 561
           +  DGT G
Sbjct: 545 VRRDGTAG 552