Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  974 bits (2519), Expect = 0.0
 Identities = 494/851 (58%), Positives = 609/851 (71%), Gaps = 43/851 (5%)

Query: 3   LEDYQRMRDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWAIP 62
           L +Y R RDF  T EPAG A    RK  AL + IQKHDA  LHYDFRLELDG L SWA+P
Sbjct: 5   LSEYNRKRDFGITAEPAGSAPAGKRKASALSFVIQKHDARNLHYDFRLELDGVLLSWAVP 64

Query: 63  KGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEGDPRDAYRK 122
           KGPSLDPS +RLAVHVEDHPL Y  FEGSIPAG YGAGDVIVWDRG+W P  +PR AY  
Sbjct: 65  KGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDEPRKAYAA 124

Query: 123 GKLKFALEGEKLAGSWNLVRTQMDGK--KEQWFLIKSRDEAARDESDYDIVAAEPDSVLS 180
           GKLKF L GEKL+G W LVRT++ G   KEQW LIK +D  AR   DYDIV A+P+SVLS
Sbjct: 125 GKLKFTLVGEKLSGDWALVRTRLKGSGDKEQWLLIKEKDPQARSADDYDIVQAQPNSVLS 184

Query: 181 DRTLVPRKRGAKARVAESPPSPVKAPAKQRAPRKQKEKVALDGALPAKLPESFKPQLATL 240
           D ++   K  AKAR                                  LPE F PQLATL
Sbjct: 185 DASVGKPKTRAKAR-------------------------------KTALPEQFTPQLATL 213

Query: 241 VDSVPAGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWL 300
           VD  P GDW+YEIKFDGYRMLARI AGEVRLFTRNGHDWT  +P+Q  AL  L L+  WL
Sbjct: 214 VDRAPEGDWQYEIKFDGYRMLARIQAGEVRLFTRNGHDWTECLPRQVKALQALKLKDSWL 273

Query: 301 DGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLEQRRAALREV 360
           DGEVV  N +G PDFQALQNAF+ GRS +I+YYLFD P+LNG D R  P+E+RRAAL+E 
Sbjct: 274 DGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPFLNGEDRRQAPVEERRAALKEA 333

Query: 361 LERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVKIKCSNRQ 420
           L  S S LLR+SE FT     I ESAC + LEG+IGKR GS Y S+RS+ W+K+KC   Q
Sbjct: 334 LAGSRSTLLRYSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSRRSADWIKLKCRLSQ 393

Query: 421 EFIIVGYTQPKGTRTGFGALLLGLHDEKGKLLYAGKVGTGFNQATLQGLHKQLKKLETDK 480
           EF+IVGYT+P+G+R+GFGALLL ++++ G L+YAG+VGTGF+QA L+ ++ QL  LE + 
Sbjct: 394 EFVIVGYTRPQGSRSGFGALLLAVNNDTG-LVYAGRVGTGFDQAALKAIYAQLTPLECET 452

Query: 481 SPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEAITHERAK 540
           SPL K   +A  RG  W+KP L+ +V +AE TR+ VVR + F GLR+DKP   + HE+ +
Sbjct: 453 SPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQAAFVGLRTDKPVAQVVHEQPR 512

Query: 541 PVASQTKASAARQPDSIGSARIKISNPERVIDPSSGISKIELARFYAQIAPWALPQLQNR 600
            V S       ++P    S  + I++P+RVID  SG  K +LA+FY  I+ W LP L++R
Sbjct: 513 TVHS-------KKPVKKTSRDVNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHR 565

Query: 601 PLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSVEALVGAAQMGT 660
           P++L+RAPEGI GE FFQKH+++LAIP+I QLD +LDP H  L+ ID+V AL+GA QMG+
Sbjct: 566 PVSLLRAPEGIEGEQFFQKHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGS 625

Query: 661 IELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFLKTSGGK 720
           +E H+W A +  +E PD FVLDLDPDPALPWK MLEA QLT ++LDE+GL +F+KTSGGK
Sbjct: 626 VEFHTWGATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGK 685

Query: 721 GLHIVVPLDSVHDWTEVKSFSQAIARYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA 780
           GLH++VPL    +W  VK+F++ IA+++ + LP  F+A SGPKNRVG+IFIDYLRN+RGA
Sbjct: 686 GLHLIVPLARRDNWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGA 745

Query: 781 STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWANIGTTRQ 840
           STVA YSVRAR GLPVSVP+ REEL  L+GA  WTV N+L+RL  L   DPWA     RQ
Sbjct: 746 STVAAYSVRARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNAL-KADPWAGY-ANRQ 803

Query: 841 RLTKQMRERLG 851
           +++K+M ++LG
Sbjct: 804 KISKKMWDKLG 814