Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 845 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Variovorax sp. SCN45

 Score =  825 bits (2132), Expect = 0.0
 Identities = 444/853 (52%), Positives = 556/853 (65%), Gaps = 32/853 (3%)

Query: 2   ALEDYQRMRDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWAI 61
           AL  Y   RDF+ TPEP    R        L + IQKH A+ LHYDFRLELDGTLKSWA+
Sbjct: 11  ALARYHGKRDFSRTPEPKTGGRAGKG---VLSFVIQKHHASHLHYDFRLELDGTLKSWAV 67

Query: 62  PKGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEGDPRDAYR 121
           PKGP LDP+V+R+AVHVEDHP+ YA FEG+IP   YGAG VIVWDRG W+P+GD R +  
Sbjct: 68  PKGPCLDPAVKRMAVHVEDHPISYAGFEGTIPPKQYGAGTVIVWDRGDWLPDGDARKSLA 127

Query: 122 KGKLKFALEGEKLAGSWNLVRTQMDGKK--EQWFLIKSRDEAARDESDYDIVAAEPDSVL 179
            GKLKF L GEKL G W LVR    G +  E W LIK RD  AR   DYD++  +P SVL
Sbjct: 128 AGKLKFELRGEKLHGHWTLVRMHGKGDESHEPWLLIKERDAEARALDDYDVLEEQPASVL 187

Query: 180 SDRTLVPRKRGAKARVAESPPSPVKAPAKQRAPRKQKEKVALDGALPAKLPESFKPQLAT 239
           S R +    + AK         P KAPAK +A  K  +KVAL        P + +PQLAT
Sbjct: 188 SGRGVDDVAQPAKKM-------PAKAPAKVQA--KAPKKVAL--------PATLQPQLAT 230

Query: 240 LVDSVPA--GDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLES 297
           L  S PA  GDW YE+KFDGYR+LARID G+VR FTRNGHDWTAK+P  A ALA L   +
Sbjct: 231 LAASPPASPGDWLYELKFDGYRLLARIDKGKVRCFTRNGHDWTAKLPALAEALAKLSTGA 290

Query: 298 GWLDGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLEQRRAAL 357
            WLDGE+ V  E G PDFQALQNAF+ G +  I+Y+LFD P+L+G DLR++P+E+RRA L
Sbjct: 291 AWLDGEITVEGENGAPDFQALQNAFDRGATSAIVYWLFDAPFLDGEDLRELPVEERRARL 350

Query: 358 REVLERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVKIKCS 417
            ++L +     LR SE F   P  +L S+ ++  EG++ KR GS Y  +RS  W+K+K  
Sbjct: 351 AKLLGKKPPAPLRLSEAFDAAPRDLLASSARIGFEGIVCKRKGSPYVPRRSPDWIKLKNQ 410

Query: 418 NRQEFIIVGYTQPKGTRTGFGALLLGLHDEK-GKLLYAGKVGTGFNQATLQGLHKQLKKL 476
            RQEF+I GYT PKG R GFGALLLG+HDE  G+L Y G VGTGF+   L  +  +L +L
Sbjct: 411 QRQEFVIGGYTAPKGARAGFGALLLGVHDEATGRLRYCGNVGTGFDAKRLADIKARLDRL 470

Query: 477 ETDKSPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEAITH 536
            TD  P    +P      AQW+KP L+ EV++ E TR+  VR +VF GLR+DKPA  I  
Sbjct: 471 ATDDCPF---SPQPRGVKAQWVKPSLVAEVSFGEWTREDRVRQAVFQGLRADKPARDIRR 527

Query: 537 ERAKPVAS--QTKASAARQPDSIGSARIKISNPERVIDPSSGISKIELARFYAQIAPWAL 594
           ER K         +S A++         KI++ +RVID  SGI+K +LA +Y  +A   L
Sbjct: 528 ERPKEAGEIEADASSPAKKKGKPAPMAQKITHADRVIDKHSGITKGQLAAYYDSVATLML 587

Query: 595 PQLQNRPLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSVEALVG 654
           P L+ RP++LVRAPEG+ GELFFQKH     IP +  LDPALDP H  LL ID+   L+G
Sbjct: 588 PHLRGRPVSLVRAPEGVGGELFFQKHVQNREIPGVRLLDPALDPGHEPLLQIDTRTGLLG 647

Query: 655 AAQMGTIELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFL 714
           AAQM  IELH+WNA +  +  PDR   DLDP   + W R+ EA  L +TLLDE+GL SFL
Sbjct: 648 AAQMNVIELHTWNATSRAIGKPDRMTFDLDPGEGVAWPRIQEAAMLVRTLLDELGLPSFL 707

Query: 715 KTSGGKGLHIVVPLDSVHDWTEVKSFSQAIARYLAKLLPSHFSAVSGPKNRVGRIFIDYL 774
           KTSGGKGLH+VVPL   +DW  VK FSQA+  +LA+ +PS F A SGP+NRVG++F+DYL
Sbjct: 708 KTSGGKGLHVVVPLRRQYDWDAVKGFSQAVVAHLAETIPSRFVAKSGPRNRVGKVFVDYL 767

Query: 775 RNSRGASTVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWAN 834
           RN  GA+TV+ +S R+R GL VSVP+  EEL  +  A+ W V N  ER   +G + PWA 
Sbjct: 768 RNGFGATTVSAWSARSRPGLGVSVPLAWEELPVVTAADQWNVGNAAERF-AIG-NKPWAA 825

Query: 835 IGTTRQRLTKQMR 847
           +  +R+ L   M+
Sbjct: 826 MERSRKGLAAAMK 838