Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score = 1035 bits (2677), Expect = 0.0
 Identities = 511/853 (59%), Positives = 636/853 (74%), Gaps = 26/853 (3%)

Query: 3   LEDYQRMRDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWAIP 62
           L++Y R RDF ATPEP+GK R + ++  ALQ+CIQKHDA+ LHYDFRLELDGTLKSWAIP
Sbjct: 5   LQEYARKRDFNATPEPSGK-RKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSWAIP 63

Query: 63  KGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEGDPRDAYRK 122
           KGPSLDP VRRLAVHVEDHPL+YA FEG IP GHYGAGDVIVWDRG+W PEGD  +AY K
Sbjct: 64  KGPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGDAHEAYAK 123

Query: 123 GKLKFALEGEKLAGSWNLVRTQMDGKKEQWFLIKSRDEAARDESDYDIVAAEPDSVLSDR 182
           GKL+F L GEKL G WNL RT + GKKEQW L+KS D  A  E++Y IV A PDSVLS+R
Sbjct: 124 GKLRFRLLGEKLGGVWNLFRTHLAGKKEQWMLVKSHDAQACSETEYSIVEALPDSVLSER 183

Query: 183 TLVPRKRGAKARVAESPPSPVKAPAKQRAPRKQKEKVALDGALPAKLPESFKPQLATLVD 242
           TLVP K  AK   A             R+ RK+ +KV       A LP   +PQLATLVD
Sbjct: 184 TLVPCKSAAKKATAP------------RSSRKRADKVQA-----APLPAQLQPQLATLVD 226

Query: 243 SVPAGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWLDG 302
           S P+GDWRYE+KFDGYR+LARI+  ++RLFTRNGHDW++KMP+Q AAL  LG++S WLDG
Sbjct: 227 SPPSGDWRYEVKFDGYRILARIEGQDIRLFTRNGHDWSSKMPRQVAALRALGIDSAWLDG 286

Query: 303 EVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLEQRRAALREVLE 362
           E+VV +E G  DFQALQNAF+      I YYLFD+P+L G DLR +PL+ RR  LR++LE
Sbjct: 287 EMVVADENGMADFQALQNAFDTEHDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLE 346

Query: 363 RSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVKIKCSNRQEF 422
            +  +++++S DF E   S+L+SAC++KLEGLIGKR  S Y+ +RS  W+K+KC  RQEF
Sbjct: 347 HNHCDVIKYSADFDEPVQSLLDSACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQEF 406

Query: 423 IIVGYTQPKGTRTGFGALLLGLHD-EKGKLLYAGKVGTGFNQATLQGLHKQLKKLETDKS 481
           +IVGYT PKG+R+GFGALLL LHD + G+L YAGKVGTGFN  TL  +H +LK LE  + 
Sbjct: 407 VIVGYTDPKGSRSGFGALLLALHDNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIARP 466

Query: 482 PLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEAITHERAKP 541
            L      A+ RG  WL+P+L+ EVA+A+MTR G+VRHSVFHGLR DK A AI  ERA P
Sbjct: 467 ALPSPPAGAEARGVHWLRPQLLAEVAFAQMTRDGIVRHSVFHGLRDDKAATAIDLERAMP 526

Query: 542 VAS-QTKASAARQPDSIGSARIKISNPERVIDPSSGISKIELARFYAQIAPWALPQLQNR 600
             +   +   A+  +++G   +++++P+RVIDP++G++K E+A +YA I+ W LPQL++R
Sbjct: 527 AKTVSNRNKQAKASENLG--ELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHR 584

Query: 601 PLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSVEALVGAAQMGT 660
           P+ALVRAP+G+ GELFFQK+A +L IP++   + A      A +VI+  + L+GA QM  
Sbjct: 585 PVALVRAPDGLGGELFFQKNAGQLYIPNVLSYEKA--EAGQAAMVINRADTLLGAVQMNM 642

Query: 661 IELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFLKTSGGK 720
           +ELH+WNA   D + PDRFVLDLDPDPALPWK M+EATQLT TLLDE+GL  FLKTSGGK
Sbjct: 643 LELHTWNATDKDFDKPDRFVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGK 702

Query: 721 GLHIVVPLDSVHDWTEVKSFSQAIARYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA 780
           G+H+VVPL     W EVK FS AI  YLAKL P   SAVSGPKNRVGRIFIDYLRN +GA
Sbjct: 703 GIHVVVPLTRRAGWDEVKDFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGA 762

Query: 781 STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWANIGTTRQ 840
           +T   YS+RAR+GLPVSVPI REELA +K AN W + NL E L E+  DDPWA++G  RQ
Sbjct: 763 TTACAYSLRARDGLPVSVPIWREELAQIKAANQWNITNLHEHLAEV--DDPWADMGKVRQ 820

Query: 841 RLTKQMRERLGVK 853
            +T +MR++LG++
Sbjct: 821 SITARMRKQLGLE 833