Pairwise Alignments

Query, 854 a.a., DNA ligase D from Pseudomonas stutzeri RCH2

Subject, 884 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

 Score =  591 bits (1524), Expect = e-173
 Identities = 348/887 (39%), Positives = 495/887 (55%), Gaps = 51/887 (5%)

Query: 3   LEDYQRMRDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWAIP 62
           L  Y++ RDF  T EP+G A+ K+   +  ++ IQKHDATRLHYD RLELDG  KSWA+ 
Sbjct: 6   LSTYKQKRDFQKTQEPSGAAKLKASNRR--RFVIQKHDATRLHYDLRLELDGVFKSWAVT 63

Query: 63  KGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEGD--PRDAY 120
           KGPSLDP  +RLAV VEDHPL+Y  FEG+IP G YG G V++WDRG W PEG+  P  A 
Sbjct: 64  KGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPEQAL 123

Query: 121 RKGKLKFALEGEKLAGSWNLVRTQMD---GKKEQWFLIKSRDEAARDESDYDIVAAEPDS 177
            KG  KF LEGE+L GS+ LVR + D   GK+  W LIK RD+ + +E    ++     S
Sbjct: 124 AKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDENDTS 183

Query: 178 VLSDRTL--VPRKRGAKARVAESPPSPVKAPA-----------KQRAPRKQKEKVALDGA 224
           V S RT+  +   +G K +        V+A A           ++ +  K K K AL   
Sbjct: 184 VASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPALKKP 243

Query: 225 LPAKLPESFKPQLATLVDSVP-AGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKM 283
             + +PE   PQL   +D  P A  W +EIKFDGYR+  RI+ GEV L TR G DWTAK 
Sbjct: 244 AKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKGLDWTAKY 303

Query: 284 PQQAAALAGLGLESGWLDGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGM 343
           P  A A +   L    +DGE+   +E G PDF ALQ A   G++  ++Y+ FD+ +    
Sbjct: 304 P--AIATSAANLPDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFAFDLLFEENE 361

Query: 344 DLRDVPLEQRRAALREVL-ERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGST 402
           DLR +PL +R+  L+ +L +  +   LRF E F    D++L+SAC++ LEG++ K+A + 
Sbjct: 362 DLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAP 421

Query: 403 YTSKRSSSWVKIKCSNRQEFIIVGYTQPKGTRTGFGALLLGLHDEKGKLLYAGKVGTGFN 462
           Y S R+ +W K KC    E +I  Y +  G    F +LL+G+  +    +Y G+VGTG+ 
Sbjct: 422 YQSGRTETWAKSKCRAGHEVVIGAYAKTNGK---FRSLLVGVF-KGDHFVYVGRVGTGYG 477

Query: 463 QATLQGLHKQLKKLETDKSPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVF 522
             T+  +  +L++LET KSP              W+KPEL+ E+ +A  T  G+VR + F
Sbjct: 478 AKTVDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQAAF 537

Query: 523 HGLRSDKPAEAITHER-AKPVASQTKASAARQPDSIGSAR--------IKISNPERVIDP 573
            GLR DKPA  +  E+ A P  + T   A  +P      +        + IS+P++ + P
Sbjct: 538 KGLREDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKAEVMGVMISSPDKALWP 597

Query: 574 SSG----ISKIELARFYAQIAPWALPQLQNRPLALVRAPEGITGELFFQKHADKLAIPHI 629
            +     ++K +LAR++  + PW +  ++ RP +++R P+GI GE+FFQ+HA      ++
Sbjct: 598 DANDGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRHA-MPGTSNL 656

Query: 630 TQLDPALDPKHGALLVIDSVEALVGAAQMGTIELHSWNAVAPDLEHPDRFVLDLDPDPAL 689
            +L      K    L ID VE L   AQ+G +ELH WN      E P R V DLDP P +
Sbjct: 657 IELVKVFGDKK-PYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLDPGPDV 715

Query: 690 PWKRMLEATQLTQTLLDEIGLASFLKTSGGKGLHIVVPL----DSVHDWTEVKSFSQAIA 745
           P+  ++EA +  +  L+E+GL SF KT+GGKGLH+V PL         W E K F+  + 
Sbjct: 716 PFSTVVEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVC 775

Query: 746 RYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGASTVAPYSVRAREGLPVSVPIHREEL 805
             +A+  P  +        R GRIF+DYLRN R A+ VAP S RAR G PVS+P+  +++
Sbjct: 776 MQMARETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAPVSMPLSWKQV 835

Query: 806 ---ADLKGANLWTVRNLLERLQELGD-DDPWANIGTTRQRLTKQMRE 848
               D K   + TV  LL +     D  D   ++    +RL K M++
Sbjct: 836 KTDLDPKRFTIRTVPALLSKTTAWQDYCDGQRSLEQAIKRLAKSMKQ 882