Pairwise Alignments

Query, 1099 a.a., exodeoxyribonuclease V, gamma subunit from Pseudomonas stutzeri RCH2

Subject, 1160 a.a., ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease, ssDNA endonuclease, recombinase subunit from Pseudomonas putida KT2440

 Score =  538 bits (1385), Expect = e-156
 Identities = 429/1178 (36%), Positives = 566/1178 (48%), Gaps = 132/1178 (11%)

Query: 4    LYHAPDLETLGELATRLLAQPLADPFAPALVVVPSQGMGRWLTLELARKQ--------GI 55
            + H   L+ L  L    + +    P    + +V S G+ +WL L LA           GI
Sbjct: 13   IVHGNRLDDLRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAEDPLEDDQGGCGI 72

Query: 56   AMQLEIQLPAKFVWDLSRTVLG--SLPEQSAFSPTTLTWRLYGWLCEPANLE---LAPRL 110
            A  +++QLP  F+W L R+VLG   +PE S      LTWRL   L  PA +E     P  
Sbjct: 73   AAAIDVQLPGSFMWQLYRSVLGRSEIPEVSLLDKAPLTWRLMRLL--PALIERPHFEPLR 130

Query: 111  AQYLDGGDERRRLSLAAKIADVFDQYLLYRDDWLAAWE---------RGETFDLGPDEAW 161
                D  D R+R  LA ++AD+FDQY +YR DWL  W          RGE   L P   W
Sbjct: 131  RFLTDDSDLRKRYQLAERLADLFDQYQVYRADWLKDWATGEHVINTARGERKVLPPGNRW 190

Query: 162  QALLWRELTKDGHPH-----RARLLGDLLQRLYSDEPLP-GLPERLLVFGISSLPPHHLR 215
            QA LWR L +D         RA +    ++R+ S E  P GLP R++VFGISSLP   L 
Sbjct: 191  QAELWRALLEDVGEQGMAQSRAGVHQRFIERINSLEQAPAGLPPRVIVFGISSLPAQALE 250

Query: 216  VLDGLARHIDVVVCALNPSREAWGEIRDIRELAR------QPESGA----DDWYLDV-GH 264
             L GL+R   V++C  NP R  W +I   ++L R      Q + G     DD  L    H
Sbjct: 251  ALAGLSRFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQQRKQGMPLQLDDQTLHQHAH 310

Query: 265  PLLASLGKQGRDFFDSLFSLTASEGSQEFGLYSEDE-DLRDD----SLLHALQNDILRLR 319
            PLLA+ GKQGRD+ + L S     GS + G++S+   DL  D    +LL+ LQ+DIL LR
Sbjct: 311  PLLAAWGKQGRDYINLLDSYD-DPGSYQ-GVFSDGRIDLFSDGSPTTLLNELQDDILELR 368

Query: 320  T-RQPDER--IVLAENDRSLEVHIAHSPLREVEILHDQLLARFATNPALTPDQVVVLTPD 376
               +  ER   V    DRS+  HIAHSP REVEILHDQLLARF+ +P L P  V+V+ PD
Sbjct: 369  PLAESRERWPAVDTTKDRSIRFHIAHSPQREVEILHDQLLARFSADPTLRPRDVIVMLPD 428

Query: 377  IERYAPFIEAVFAP-REGSPR-IPYSLADRSLRAEMPLIEAFLELLMLAQSRFTAEEVLA 434
            I+ YAP I AVF   +   PR IP++L D+  R   PL+ A   LL L  SRF   EVL 
Sbjct: 429  IDTYAPHIRAVFGQLQRNDPRYIPFTLTDQGQRGREPLLIALEHLLKLPDSRFAVSEVLD 488

Query: 435  WLEQPAIARRAGIESEDLPLLRDWLRDAGVRWGRDGSQRARLGLPDE-SAFTWRQGLDRL 493
             L+ PA+  R GI   DLP L  W+  AG+RWG D +QRA LGLP      +WR GL R+
Sbjct: 489  LLDVPAVRARFGIRENDLPTLHRWIEGAGIRWGLDAAQRASLGLPAGLEQNSWRFGLRRM 548

Query: 494  LLGFAAPPQLAGDHAPLLGEHWPLDALEGARGQLLGRLVEFVERLGVLADQLARPRPLAE 553
            LLG+A     A D         P D + G    L+G LV  ++ L V    L+ P  +++
Sbjct: 549  LLGYAVGVGEACDGIE------PYDEIGGLDAALIGPLVALLDALEVACQALSEPATVSQ 602

Query: 554  WADDLQILIDTLFDEREAGDTLLLLSLACAALRDQ----AQAADLTRPIELELVHQQLSA 609
            W + L  L+   F   + GD  LL+ L    LRD      +   L  P+ L +V +   +
Sbjct: 603  WGERLHALLHVFFLAEDEGDEFLLMQLQ--DLRDSWLEVCETVGLHDPLPLTVVREAWLS 660

Query: 610  ALQQGGGASGFLTGAVTFCTMVPMRSLPFRVVCLLGLDDGAFPRRTPPSGFDLIGRHPRR 669
             L QG  +  FL G+V FCT++PMR++PFRVVCLLG++DG +PR  PP  FDL+    R 
Sbjct: 661  GLDQGKLSQRFLAGSVNFCTLMPMRAIPFRVVCLLGMNDGDYPRAQPPLDFDLMASDYRP 720

Query: 670  GDRARRLDDRYLLLETLLSAREALYLSYVGRDPRDNAVLPPSVLLSEVLEAVDMTAELPV 729
            GDR+RR DDRYLLLE LLSAR+ LY+S+VGR  RDN+  P SVL+ ++ + +     L  
Sbjct: 721  GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHIAAGWHLAD 780

Query: 730  AQASE--HTGESVPKTASQKILVAHPLQPFSPRNFGDGLCTGFSSPWFRAAGR---LAEP 784
            AQ  +    GE +    +Q+    HPLQPFSPR F  G      SP F  A     L + 
Sbjct: 781  AQQGQPARPGEQLLHALTQE----HPLQPFSPRYFQKG------SPLFSYAHEWQVLHQQ 830

Query: 785  PQTQPQPFASLLAEPDEAWLTIEPSQLLQCFRHPARFLLEQRLGLRLADDQESLASDEPF 844
             +T  Q    L    D   L++   QL    RHP R    QRL +     +     +EPF
Sbjct: 831  GETDAQSEPGLPPYQDAEALSLH--QLNDFLRHPVRHFFSQRLKVYFEALEAPTPDEEPF 888

Query: 845  DLEMPAWNGLRRLSLQA-------MEHGWSDDDERRMACAAGWLPTGELGQALWGKLRGP 897
             L+     G     L A        E        R  AC  G LP    G+ L  +L  P
Sbjct: 889  VLDTLQRYGASESLLGAALAEPDNAEQALRAQARRLQAC--GLLPLAGFGELLQNELIEP 946

Query: 898  VRAFAPR---LFELRPDDVPEPLPVDITLAGVRVHGWLDGV-----------------TP 937
            +     R   L +  P  V   LPV       R+ GWL  V                   
Sbjct: 947  LPDLLQRHQQLLQRWPQLVEGALPVHFEHGQHRLEGWLGRVFQAEDQSLLSITTVPNTIS 1006

Query: 938  AGLFGWKLGRLGEWDLPPFWLRHLLLNLSATPGIERHSLMLSPAGDWQLGPL--ANAAGL 995
            AG    K  RL    + P W+ HL    +   G   +S +++      L PL  A AA L
Sbjct: 1007 AGRNNLKWHRL----IAP-WVTHL---AACAAGYPYNSALVASDLTLLLAPLPQAQAAQL 1058

Query: 996  LEPWLEAYRCAIREPLPLLPRSSHAFAKGYRKPARGSEPLDCGRKRAREAWLGAEFSPIA 1055
            L   L A + A+  PLP+  +++ A+           +  D     A  A+ G E +   
Sbjct: 1059 LGDLLVARQAAMNAPLPVAAKTAFAWL--------AQDDADKALAAAARAYEGDERTSFG 1110

Query: 1056 AEGEDPWNMLAFRDRDPL--DQRFETLAQELIGPALDA 1091
               E       FRD   L  D+ FE   + L  P   A
Sbjct: 1111 ERSESIALARQFRDFAALTADETFEGWCETLYRPLFTA 1148