Pairwise Alignments

Query, 307 a.a., DNA polymerase LigD, polymerase domain from Pseudomonas stutzeri RCH2

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  334 bits (857), Expect = 4e-96
 Identities = 159/302 (52%), Positives = 222/302 (73%), Gaps = 7/302 (2%)

Query: 2   PAKRKSTERPLVGGIGISNPQRVIDAATGTTKFALAEYYLSVADWLVPQLAGRPLSIVRA 61
           P K+ S +      + I++P RVID  +GT K  LA++Y +++ W++P L  RP+S++RA
Sbjct: 519 PVKKTSRD------VNITHPDRVIDKHSGTQKQQLAQFYDTISQWILPFLRHRPVSLLRA 572

Query: 62  PEGIGGESFFQRHCGRLKMPHMRALPKDLDPEHARLIQADNITAVLEAVQMGSVEFHTWN 121
           PEGI GE FFQ+H  RL +P+++ L + LDP HARL++ DN+ A++ AVQMGSVEFHTW 
Sbjct: 573 PEGIEGEQFFQKHSERLAIPNIKQLDQSLDPGHARLMEIDNVGALIGAVQMGSVEFHTWG 632

Query: 122 ARSDRIERPDRVIFDLDPDPALPWSRMIDTTELTLALLDELGLRAFLKTSGGRGMHVVVP 181
           A SD+IE PD  + DLDPDPALPW  M++  +LTL++LDELGL+AF+KTSGG+G+H++VP
Sbjct: 633 ATSDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVP 692

Query: 182 IERRHDWDCVRSFAQGVTQRLGRQHPERIACKMGAQNRVGRIFVDYLRNQRGASTVAAFS 241
           + RR +W+ V++FA+G+ Q +  Q PER     G +NRVG+IF+DYLRN RGASTVAA+S
Sbjct: 693 LARRDNWETVKAFAKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYS 752

Query: 242 VRARPGLGVSLPVSLDEMRQLEGADQWRLGNARAYLSERGADPWAEYGSTRQRLTSTLLE 301
           VRARPGL VS+PVS +E+  L GA QW + N    L+   ADPWA Y + RQ+++  + +
Sbjct: 753 VRARPGLPVSVPVSREELEGLRGAQQWTVANVLQRLNALKADPWAGY-ANRQKISKKMWD 811

Query: 302 TL 303
            L
Sbjct: 812 KL 813