Pairwise Alignments

Query, 307 a.a., DNA polymerase LigD, polymerase domain from Pseudomonas stutzeri RCH2

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  295 bits (756), Expect = 2e-84
 Identities = 145/312 (46%), Positives = 209/312 (66%), Gaps = 9/312 (2%)

Query: 1   MPAKRKSTERPL------VGGIGISNPQRVIDAATGTTKFALAEYYLSVADWLVPQLAGR 54
           MPAK  S           +G + +++P RVID  TG TK  +AEYY  ++ W++PQL  R
Sbjct: 525 MPAKTVSNRNKQAKASENLGELRLTHPDRVIDPTTGVTKREVAEYYAGISQWILPQLKHR 584

Query: 55  PLSIVRAPEGIGGESFFQRHCGRLKMPHMRALPKDLDPEHARLIQADNITAVLEAVQMGS 114
           P+++VRAP+G+GGE FFQ++ G+L +P++ +  K    + A +I  +    +L AVQM  
Sbjct: 585 PVALVRAPDGLGGELFFQKNAGQLYIPNVLSYEKAEAGQAAMVI--NRADTLLGAVQMNM 642

Query: 115 VEFHTWNARSDRIERPDRVIFDLDPDPALPWSRMIDTTELTLALLDELGLRAFLKTSGGR 174
           +E HTWNA     ++PDR + DLDPDPALPW  M++ T+LTL LLDELGL+ FLKTSGG+
Sbjct: 643 LELHTWNATDKDFDKPDRFVLDLDPDPALPWKAMVEATQLTLTLLDELGLKVFLKTSGGK 702

Query: 175 GMHVVVPIERRHDWDCVRSFAQGVTQRLGRQHPERIACKMGAQNRVGRIFVDYLRNQRGA 234
           G+HVVVP+ RR  WD V+ F+  +   L +  PER++   G +NRVGRIF+DYLRN +GA
Sbjct: 703 GIHVVVPLTRRAGWDEVKDFSHAIVNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGA 762

Query: 235 STVAAFSVRARPGLGVSLPVSLDEMRQLEGADQWRLGNARAYLSERGADPWAEYGSTRQR 294
           +T  A+S+RAR GL VS+P+  +E+ Q++ A+QW + N   +L+E   DPWA+ G  RQ 
Sbjct: 763 TTACAYSLRARDGLPVSVPIWREELAQIKAANQWNITNLHEHLAEVD-DPWADMGKVRQS 821

Query: 295 LTSTLLETLRKE 306
           +T+ + + L  E
Sbjct: 822 ITARMRKQLGLE 833