Pairwise Alignments

Query, 409 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

Subject, 396 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  261 bits (667), Expect = 3e-74
 Identities = 149/349 (42%), Positives = 206/349 (59%), Gaps = 6/349 (1%)

Query: 29  ATQSGMPPPAVSVAEVIEQQVTEWDELTGRLEAPESVEIRPRVSGFIDKAAFEEGALVKK 88
           +T +  P   V+VA+V  + V  W+E +GRLEA + V+IR RV+G I    F EGALVK+
Sbjct: 40  STPAETPAIPVTVAKVESRDVMRWEEFSGRLEAVDRVQIRSRVAGQIKAVHFREGALVKE 99

Query: 89  GDLLFQIDPRPFQAEVKRLQAQLQQARAIQQRTVAEAERGERLRQKNAISAELADARVSA 148
           GD LF IDP P+QA V   + Q+  A A       E +RG RL     IS    D R S+
Sbjct: 100 GDPLFTIDPAPYQAAVAGAEGQVASAEAKVSLAKTELDRGRRLSDNRTISQSDLDQRQSS 159

Query: 149 ASEARSATAAIQAQLDRAQLDLSFTRVTAPIDGRVGRALITSGNLVNA--SEALLTTLVS 206
            ++A +   A +A L  AQLDL +T + AP+ GRVGR  IT+GNLV A  +   LTTLVS
Sbjct: 160 FADAEAQLRAARAALTTAQLDLGYTEIIAPVSGRVGRIEITAGNLVAAGSTSPALTTLVS 219

Query: 207 TDKVYAYFEADERTYLKYRELARNGDRG----ETTPVYLGLSSEDGHPHLGHMDFVDNQV 262
            + +YA F A E    K        D      E  PV +G  S++G P  G +  +DNQV
Sbjct: 220 VNPIYASFNASEGVVAKALAELPKTDGALPALEQIPVEIGTLSDEGTPIKGTLHLIDNQV 279

Query: 263 DPRTGTIRGRAVFDNRDGSFTPGLYARLKLVGSATYDAVLIKDVAVGTDLGKKFVLVLAE 322
           D  +GTI  RA+FDN DG   PG + R+++      + ++I D A+GTD  K+FV V+  
Sbjct: 280 DSASGTIGVRAIFDNPDGRLIPGQFVRVRMGEPKPENRIVISDRAIGTDQDKRFVFVVDA 339

Query: 323 DGTVAYRPVELGPKLEGLRIVRSGLAKGESIVVNGLQRVRPGSPVQPES 371
           +  V+YR ++ G   +G RI+ SGLA G++IVVNGLQR+RPG+ + P++
Sbjct: 340 ENKVSYRQIKPGAPADGQRIIDSGLAAGDTIVVNGLQRIRPGATIAPQA 388