Pairwise Alignments

Query, 1034 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

Subject, 1050 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score =  772 bits (1994), Expect = 0.0
 Identities = 413/1029 (40%), Positives = 643/1029 (62%), Gaps = 19/1029 (1%)

Query: 1    MNLSAPFIARPVATMLLSLAILLLGGVSFGLLPVSPLPNMDFPVITVQASLPGASPEIMA 60
            MN+S   I RP  T+LLS A++++G  ++  +PV+ LP+ + PVI V A LPGASP+ MA
Sbjct: 1    MNISELCIRRPAMTVLLSAAVVVIGIFAYFSIPVAALPSYNTPVINVNAQLPGASPDTMA 60

Query: 61   SSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAARDVQAAINASRNLLP 120
            SSVA PLE+   +I G+  ++S ++QG T + ++F   RDI+ AA DVQAA+  ++  LP
Sbjct: 61   SSVALPLEKQFSTIPGLQTISSVNTQGVTSLTLEFVSSRDIDAAAVDVQAALLRAQRQLP 120

Query: 121  SGMRSMPTYRKINPSQAPIMVLSLTSEVLDKAELYDIGSTILAQKLSQVSGVGEIQVGGS 180
              +  +P+YRK+NP+ AP++ ++L S  ++ +EL D    +++  LS + GV ++ V G 
Sbjct: 121  QELTQLPSYRKVNPADAPVLFIALISPSMNPSELNDYAENLISPTLSTIDGVAQVGVYGR 180

Query: 181  SLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVEDADQHWQVRANDQLHQAAD 240
               AVR++     L   G++LDE+ + + + N   P G ++   Q   ++AN QL +AAD
Sbjct: 181  KAFAVRIKANADLLNARGITLDELAKAVNSANANTPVGTLDGPRQTLTIQANRQLMKAAD 240

Query: 241  YTPLIIRYQDGAALRLGDVARVRDSVEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEGI 300
            +  LI+  ++G+ +RL +VA + DS E    +  FN + ++ L V RQ  AN ++ ++ +
Sbjct: 241  FAKLIVGQRNGSPVRLDEVATIEDSFESVKTASSFNGQDSISLAVQRQPNANTVQVVDAV 300

Query: 301  RRELPALQAIMPGSVDLNIAMDRSPVIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTAL 360
            R  +P  +A +P SV++ +  DRS  IR  +H+ + TLL  + LV++++FLFL RL   L
Sbjct: 301  RALIPRFKAELPQSVEIQMVNDRSLSIREAVHDVQLTLLGTIALVVLVIFLFLHRLVATL 360

Query: 361  IPALAVPVSLVGTFAVMYMFGFSLNVLSLMALILAAGLVVDDAIVVLENIARHIDDGMPP 420
            IPA  +P+SL+G  A++Y FG+SL+ +SL+ + LA GLVVDDAIVVLENI R+++ GM P
Sbjct: 361  IPAATIPISLIGAVALLYAFGYSLDNISLLGITLAVGLVVDDAIVVLENIMRYVEKGMDP 420

Query: 421  LKAAYVGTREVGFTLLSMNLSLVVVFVSILYMGGIVERLFREFSITLAAAILVSLLVSLT 480
              AA  G REVGFT++S+++SLV VF+ I +M G++  LF EF++ +A A+LVS +VSLT
Sbjct: 421  FAAALRGAREVGFTIVSISISLVAVFIPIFFMPGVIGLLFHEFAVVVALAVLVSAVVSLT 480

Query: 481  LTPMLCARWLKPHEPEKEGRLQ-------------RWSHDAHQWLLRYYDRSLSWALRHR 527
            L PML +R LK   P KEG +              R     ++ +   Y RSL W L HR
Sbjct: 481  LVPMLASRLLK-QVPRKEGAIDHEEEHPEPGTAIGRAFERGYRAVHGSYMRSLDWTLGHR 539

Query: 528  RITLLSLLATIALNVVLYVQVPKTFLPQQDTGQITGFIRGDDGMSFQVMQPKMEIFRKAV 587
             + LL    T  +   L+  +PK F P++D GQI       + +SF  M+   +    A+
Sbjct: 540  NVMLLMAGLTFVVTGWLFATIPKGFFPEEDIGQIQITTEAAEDISFTAMKALQDRVADAL 599

Query: 588  LADPAVESVAGFIGGQGGI---NNAFMIVRLKPLNERGISAQKVIERIRKNQPKVPGGRM 644
             ADP+V+ V+ F+G  G     N+  +   LK   ER  +  KV+E +R+   ++PG  +
Sbjct: 600  QADPSVDYVSSFVGVGGPTATQNSGRLFAVLKARGERP-AMGKVLESLRQRFREIPGIAV 658

Query: 645  FLMADQDLQFGGGRQSSSAYAYTLLASDLNDLRTWVPQVTRALSDLPELTSIDANDGEGA 704
            ++   Q+L+  GGRQS + + YTL + +  ++  W  ++   +   P    + ++     
Sbjct: 659  YMQPVQNLRL-GGRQSKARFQYTLQSVNAGEMVPWATKLMERMRADPAFRDVTSDSQNRG 717

Query: 705  QQISLKIDRDAAKRLGIDMSTVTTLLNNAFSQRQISTIYESLNQYQVVMEIDPSYAQYPE 764
             Q +L IDRD A  LG+ +  + T L NA+  RQI +IY + N YQV++    +  Q+ E
Sbjct: 718  LQATLDIDRDKAGVLGVAVGDLRTALYNAYGDRQIGSIYGASNTYQVILSAADNDRQFEE 777

Query: 765  VLEQIHVVTSDGRRVPLAAFARYERSLEEDRVSHDGQFAAENIDFDLAPGVSLDQATLAI 824
             + ++ V ++ G+ VPL+AF+  +R++    V+H GQ  A  + F+L P V L  AT  I
Sbjct: 778  DVARLSVRSNTGKLVPLSAFSTVKRTVGPTSVNHQGQLQAVTVSFNLGPDVPLGNATAKI 837

Query: 825  ERAVAAIGMPSEVQGRLGGTGSAFQTTQEGQPLMILGALLLVYIVLGILYESYIHPLTIL 884
            ++    + MP  +    GG  + FQ++Q  Q ++++ A+L++Y++LG+LYESYIHP+TIL
Sbjct: 838  DQFKDELKMPQSIITTYGGDAAVFQSSQSSQAVLLVLAVLVIYVLLGVLYESYIHPITIL 897

Query: 885  STLPSAGVGALLAIILTGDQFSLISLLGLFLLIGVVKKNAILMIDLALQFERQDKLSPAD 944
            + LPSA VGAL+++ + G   +LI+ +G+ LLIG+VKKNAI++ID AL  +R + LSP D
Sbjct: 898  AGLPSAAVGALISLKIFGFDLTLIATIGILLLIGIVKKNAIMLIDFALDAQRTEGLSPVD 957

Query: 945  SIHRACLLRFRPILMTTMAAILGALPLLLGGAEGAEMRQPLGLTIIGGLLLSQILTLYTT 1004
            +I  AC LRFRPILMTT+AA++GALPL LG   GAE+RQPLG+ ++GGL+ SQ++TLY T
Sbjct: 958  AIREACRLRFRPILMTTLAALMGALPLALGLGAGAELRQPLGVAVVGGLIFSQVITLYIT 1017

Query: 1005 PVVYLYLDR 1013
            P +YL LDR
Sbjct: 1018 PAIYLALDR 1026