Pairwise Alignments

Query, 1034 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

Subject, 1024 a.a., multidrug efflux RND transporter permease subunit MdtC from Erwinia tracheiphila SCR3

 Score = 1115 bits (2883), Expect = 0.0
 Identities = 585/1022 (57%), Positives = 757/1022 (74%), Gaps = 14/1022 (1%)

Query: 1    MNLSAPFIARPVATMLLSLAILLLGGVSFGLLPVSPLPNMDFPVITVQASLPGASPEIMA 60
            M   A FI RPVAT+LL++AI L G +   LLPV+PLP MDFPVI V ASLPGASPE MA
Sbjct: 1    MKFFALFIHRPVATILLTIAITLAGLLGLRLLPVAPLPQMDFPVIMVSASLPGASPETMA 60

Query: 61   SSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAARDVQAAINASRNLLP 120
            SSVATPLERSLG IAGV++MTS S+ GSTRII+ FD DRDINGAARDVQ AINA+++LLP
Sbjct: 61   SSVATPLERSLGRIAGVTEMTSTSALGSTRIILMFDYDRDINGAARDVQGAINAAQSLLP 120

Query: 121  SGMRSMPTYRKINPSQAPIMVLSLTSEVLDKAELYDIGSTILAQKLSQVSGVGEIQVGGS 180
            SGM S P++RK NPS APIM+L+LTS+   + ELYD  ST LAQKL+Q+ GVG++  GGS
Sbjct: 121  SGMPSRPSWRKANPSDAPIMILTLTSDSYSQGELYDYASTQLAQKLAQIDGVGDVATGGS 180

Query: 181  SLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVEDADQHWQVRANDQLHQAAD 240
            SLPAVRV L PQ L   GVSLD VRQTIAN N RRP GM+ED+ Q WQV+ NDQL  AA+
Sbjct: 181  SLPAVRVALNPQALFNQGVSLDAVRQTIANANQRRPLGMIEDSQQRWQVKTNDQLKTAAE 240

Query: 241  YTPLIIRYQDGAALRLGDVARVRDSVEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEGI 300
            + PLI+ YQ+GA +RL DVA V DSV+D  N+G  N + A+LLI+ +   ANII+T++ I
Sbjct: 241  FQPLIVHYQNGAVVRLQDVASVTDSVQDVRNAGMANAKPAILLIIRKLPEANIIDTVDRI 300

Query: 301  RRELPALQAIMPGSVDLNIAMDRSPVIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTAL 360
            R E+P L++I+P S+ L+I+ DRSP IRA+L E E++L+IAV LV+++VFLFL   R  L
Sbjct: 301  RAEVPKLRSIIPASIQLDISQDRSPTIRASLAEVEQSLVIAVILVVLVVFLFLRSGRATL 360

Query: 361  IPALAVPVSLVGTFAVMYMFGFSLNVLSLMALILAAGLVVDDAIVVLENIARHIDDGMPP 420
            IPA+AVPVSL GTFA MY+ GFSLN LSLMAL +A G VVDDAIVVLENI RHI+ GM P
Sbjct: 361  IPAIAVPVSLTGTFAAMYLLGFSLNNLSLMALTIATGFVVDDAIVVLENITRHIEKGMKP 420

Query: 421  LKAAYVGTREVGFTLLSMNLSLVVVFVSILYMGGIVERLFREFSITLAAAILVSLLVSLT 480
            L+A+  G  EVGFT+LSM+LSLV VF+ +L MGG++ R F+EF++TL+ +I +SLL+SLT
Sbjct: 421  LQASLRGVNEVGFTVLSMSLSLVAVFLPLLLMGGVIGRFFKEFALTLSVSIALSLLISLT 480

Query: 481  LTPMLCARWLKP---HEPEKE--GRLQRWSHDAHQWLLRYYDRSLSWALRHRRITLLSLL 535
            LTPM+CAR LK    H P ++  G L    H +       Y RSL W L H R  LL  +
Sbjct: 481  LTPMMCARLLKARPVHPPRRQRFGSLFALVHCS-------YGRSLHWVLGHSRWALLVFV 533

Query: 536  ATIALNVVLYVQVPKTFLPQQDTGQITGFIRGDDGMSFQVMQPKMEIFRKAVLADPAVES 595
            ATI L   LY  +PKTF+P+QDTG++ G+I+ D  +SFQ M+ K++ F K +  D AV+S
Sbjct: 534  ATIGLTFYLYATIPKTFMPEQDTGRLMGYIQADQSISFQAMRGKLQDFMKIIRDDQAVDS 593

Query: 596  VAGFIGGQGGINNAFMIVRLKPLNERGISAQKVIERIRKNQPKVPGGRMFLMADQDLQFG 655
            V GF GG    N+  M + LKPL +RG +AQ+V+ R+R    K PG  ++L A QDL+  
Sbjct: 594  VVGFTGG-SRTNSGMMFISLKPLKQRGETAQQVMARLRVRLAKEPGASLYLQAVQDLRM- 651

Query: 656  GGRQSSSAYAYTLLASDLNDLRTWVPQVTRALSDLPELTSIDANDGEGAQQISLKIDRDA 715
            GGR+S++ Y YTLL+  L+DLR W P + +A + LPEL  ++++  +   +++L  DR +
Sbjct: 652  GGRESNAGYQYTLLSDSLDDLRNWEPDIRKAFAALPELADVNSDQQDKGTEMALIYDRAS 711

Query: 716  AKRLGIDMSTVTTLLNNAFSQRQISTIYESLNQYQVVMEIDPSYAQYPEVLEQIHVVTSD 775
              +LGI++  V  LLNNAF QRQISTIY+ LNQY+V+MEIDP Y Q    L+ + V+ ++
Sbjct: 712  MAQLGINVLEVNGLLNNAFGQRQISTIYQPLNQYRVIMEIDPRYTQDISSLDLLFVINNE 771

Query: 776  GRRVPLAAFARYERSLEEDRVSHDGQFAAENIDFDLAPGVSLDQATLAIERAVAAIGMPS 835
            G+ +PL+AFA ++ +     V+H G  AA  I F+L  GVSL QA+ AIER++ A+G+P+
Sbjct: 772  GKPIPLSAFASWQPANAPLSVNHQGLSAASTISFNLPEGVSLSQASDAIERSMTALGVPA 831

Query: 836  EVQGRLGGTGSAFQTTQEGQPLMILGALLLVYIVLGILYESYIHPLTILSTLPSAGVGAL 895
             V+G   GT  AFQ TQ GQ  +IL A+  VYIVLG+LYESY+HPLTILSTLPSAG+GAL
Sbjct: 832  SVRGSFAGTAQAFQKTQSGQLWLILAAIATVYIVLGVLYESYVHPLTILSTLPSAGLGAL 891

Query: 896  LAIILTGDQFSLISLLGLFLLIGVVKKNAILMIDLALQFERQDKLSPADSIHRACLLRFR 955
            LA+ L    FSLI+L+G+ LLIG+VKKNAI+M+D AL+ +R DKL+  D+I  A LLRFR
Sbjct: 892  LALELFSAPFSLIALIGILLLIGIVKKNAIMMVDFALEAQRNDKLNARDAIFEASLLRFR 951

Query: 956  PILMTTMAAILGALPLLLGGAEGAEMRQPLGLTIIGGLLLSQILTLYTTPVVYLYLDRLR 1015
            PI+MTT+AA+ GALPL+    +GAE+RQPLG+TI GGL++SQ+LTLYTTPVVYLY+D+LR
Sbjct: 952  PIMMTTLAALFGALPLVFTAGDGAELRQPLGITIAGGLVMSQLLTLYTTPVVYLYMDKLR 1011

Query: 1016 HR 1017
             +
Sbjct: 1012 RK 1013