Pairwise Alignments

Query, 1034 a.a., Cation/multidrug efflux pump from Pseudomonas stutzeri RCH2

Subject, 1029 a.a., multidrug efflux RND transporter permease subunit MdtC from Dickeya dianthicola ME23

 Score = 1117 bits (2889), Expect = 0.0
 Identities = 580/1028 (56%), Positives = 764/1028 (74%), Gaps = 7/1028 (0%)

Query: 1    MNLSAPFIARPVATMLLSLAILLLGGVSFGLLPVSPLPNMDFPVITVQASLPGASPEIMA 60
            M   A FI RPVAT LL+LAI L G + + LLPVSPLP +D+PVI+V A+LPGASPE MA
Sbjct: 1    MKFFALFIHRPVATTLLALAIALCGLIGYQLLPVSPLPQVDYPVISVTATLPGASPETMA 60

Query: 61   SSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAARDVQAAINASRNLLP 120
            SSVATPLERSLG IAGV++MTS SS G+TRII+QF LDRDINGAARDVQAAINA+++LLP
Sbjct: 61   SSVATPLERSLGRIAGVNEMTSTSSLGNTRIILQFALDRDINGAARDVQAAINAAQSLLP 120

Query: 121  SGMRSMPTYRKINPSQAPIMVLSLTSEVLDKAELYDIGSTILAQKLSQVSGVGEIQVGGS 180
            S M S P YRK+NPS APIM+++LTS+     +LYD  ST +AQ++SQ+ GVG++ +GGS
Sbjct: 121  SSMPSRPYYRKVNPSDAPIMIITLTSDTYGPGQLYDYASTQIAQRVSQIDGVGDVTIGGS 180

Query: 181  SLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVEDADQHWQVRANDQLHQAAD 240
            SLPAVRV L PQ L   GVSLD VRQ+IA  NVR+P G V+    H+Q++ ND+L  A  
Sbjct: 181  SLPAVRVALNPQALFNQGVSLDAVRQSIAQSNVRQPLGSVDSGSTHYQIQTNDELKTADA 240

Query: 241  YTPLIIRYQDGAALRLGDVARVRDSVEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEGI 300
            Y  LI+ Y +GA +RL DVA V+DSV++  N+G  N + AVL+++ R   ANII T++ I
Sbjct: 241  YRSLIVHYNNGAPVRLSDVATVKDSVQNVLNAGMTNAKPAVLVMIRRAPDANIISTVDAI 300

Query: 301  RRELPALQAIMPGSVDLNIAMDRSPVIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTAL 360
            R  +P LQA++P S+ LN+A DRSP IRA+L + ER+L IAV LVI++VFLFL   R  L
Sbjct: 301  RASMPELQALLPASITLNVAQDRSPTIRASLRDVERSLTIAVSLVILVVFLFLRSGRATL 360

Query: 361  IPALAVPVSLVGTFAVMYMFGFSLNVLSLMALILAAGLVVDDAIVVLENIARHIDDGMPP 420
            IPA+AVPVSL+GTF+ MY+ GFSLN LSLMAL +A G VVDDAIVVLENI+RHI+ GM P
Sbjct: 361  IPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENISRHIEAGMKP 420

Query: 421  LKAAYVGTREVGFTLLSMNLSLVVVFVSILYMGGIVERLFREFSITLAAAILVSLLVSLT 480
            L+A+  G REVGFT++SM+LSL+ VF+ +L+M G+  RLFREFSITL+ AIL+SLLVS+T
Sbjct: 421  LQASLQGVREVGFTVVSMSLSLIAVFIPLLFMDGLPGRLFREFSITLSVAILISLLVSIT 480

Query: 481  LTPMLCARWLKPHEPEKEGRLQRWSHDAHQWLLRYYDRSLSWALRHRRITLLSLLATIAL 540
            LTPM+CAR L+ H P  + R + ++      L + Y RSL W L H R  ++ LL TI L
Sbjct: 481  LTPMMCARLLRLHTPRSQPRTRGFNR-LLLGLQQGYGRSLRWVLNHSRWVMMVLLCTIGL 539

Query: 541  NVVLYVQVPKTFLPQQDTGQITGFIRGDDGMSFQVMQPKMEIFRKAVLADPAVESVAGFI 600
            +V LY+ +PKTF P+QDTG++ GFI+ D  +SFQ M+ K++ F   V ADPAV++V GF 
Sbjct: 540  SVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQAMKRKLQDFMTIVRADPAVDNVTGFT 599

Query: 601  GGQGGINNAFMIVRLKPLNERGISAQKVIERIRKNQPKVPGGRMFLMADQDLQFGGGRQS 660
            GG    N+  M + LKPL +R +SAQ+VI R+R N  K PG  ++LMA QD++  GGR++
Sbjct: 600  GGM-RTNSGSMFISLKPLAQRDVSAQQVITRLRANLAKEPGANLYLMAVQDVRI-GGREA 657

Query: 661  SSAYAYTLLASDLNDLRTWVPQVTRALSDLPELTSIDANDGEGAQQISLKIDRDAAKRLG 720
            +  Y ++LL+ DL  LRTW P++  ALS LP+L  + ++  +   ++ +  DRDA  RLG
Sbjct: 658  NGGYQFSLLSDDLAVLRTWEPKIRDALSKLPQLADVSSDQQDKGAELMMVYDRDAMARLG 717

Query: 721  IDMSTVTTLLNNAFSQRQISTIYESLNQYQVVMEIDPSYAQYPEVLEQIHVVTSDGRRVP 780
            I++++V  LLNNAF QRQISTIY+ +NQY+VVME+D +Y Q P  L+++ V+ +DG+ +P
Sbjct: 718  INVASVNALLNNAFGQRQISTIYQPMNQYKVVMEVDSAYTQDPSSLDKMFVINNDGKPIP 777

Query: 781  LAAFARYERSLEEDRVSHDGQFAAENIDFDLAPGVSLDQATLAIERAVAAIGMPSEVQGR 840
            L+ FAR++ +     V+H G  AA  + F+L  G SL  AT AIER +  + +PS V+G+
Sbjct: 778  LSFFARWQPANAPLAVNHQGLSAAATLSFNLPEGASLSDATTAIERTMTTLRVPSTVRGQ 837

Query: 841  LGGTGSAFQTTQEGQPLMILGALLLVYIVLGILYESYIHPLTILSTLPSAGVGALLAIIL 900
              GT  AFQ +Q  Q ++I+ A+L VYIVLGILYE+  HPLTILSTLPSAGVGALLA+ L
Sbjct: 838  FAGTALAFQQSQHSQVVLIIAAILTVYIVLGILYENVAHPLTILSTLPSAGVGALLALEL 897

Query: 901  TGDQFSLISLLGLFLLIGVVKKNAILMIDLALQFERQDKLSPADSIHRACLLRFRPILMT 960
             G  FSLI+L+G+ LLIG+VKKNAI+M+D AL  +R+ KL   ++I RAC+LRFRPI+MT
Sbjct: 898  FGKPFSLIALIGILLLIGIVKKNAIMMVDFALVAQREGKLPAREAIFRACMLRFRPIMMT 957

Query: 961  TMAAILGALPLLLGGAEGAEMRQPLGLTIIGGLLLSQILTLYTTPVVYLYLDRLRHRFNS 1020
            TMAA+ GALPL+L   +G+E+RQPLG+TI+GGL++SQ+LTLYTTPVVYL+ D L+ R   
Sbjct: 958  TMAALFGALPLVLSNGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDSLQWR--- 1014

Query: 1021 WRGVRTDA 1028
             R  RTDA
Sbjct: 1015 -RRKRTDA 1021