Pairwise Alignments

Query, 338 a.a., D-gluconate TRAP transporter, periplasmic component (from data) from Pseudomonas stutzeri RCH2

Subject, 328 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  208 bits (530), Expect = 1e-58
 Identities = 112/315 (35%), Positives = 184/315 (58%), Gaps = 13/315 (4%)

Query: 23  AQAADDIRPRMIRFGYGLNEDSNQGRAAKLLAEEVAKASGGKLKVRTFASASLGSDDQMQ 82
           A +   +  + +RFGY  ++  +Q  AAK   + + + + G+LK++ F  ++LG+   M 
Sbjct: 17  AFSTSSLAAQSLRFGYETSQTDSQHIAAKKFNDLLQERTKGELKLKLFPDSTLGNAQAMI 76

Query: 83  NALIGGAQEMMVGSTATLVGISKEMAVWDTPFLFTDPRQADQVLDGPVGRQVMDKLEEKG 142
           + + GG  +M +  +    G+S  M + D PFLF D   A + LDG VG  +   LE KG
Sbjct: 77  SGVRGGTIDMEMSGSNNFAGLSPVMNLLDVPFLFRDTAHAHKTLDGKVGDDLKASLEGKG 136

Query: 143 LVGLVYWENGFRNVTNSARPIEKLEDFNGVKLRVMPNPVFIDTFKRMGANAVPLPFSELF 202
           L  L YWENG+R+VTNS  P++   D  G+K+R   +P+ I  FK  GAN +P+PF+E++
Sbjct: 137 LKVLAYWENGWRDVTNSRAPVKTPADLKGLKIRTNNSPMNIAAFKVFGANPIPMPFAEVY 196

Query: 203 TALETKAVDGQENPFNTILSSKFYEVQKYLSVTNHVYSPWIVTVSKRWWDGLSATEQGIL 262
           T LET+ +D QE+P N + S+KF+EVQK+LS+T+H YSP +V ++K  +DGLS   Q  L
Sbjct: 197 TGLETRTIDAQEHPINVVWSAKFFEVQKFLSLTHHAYSPLLVVINKAKFDGLSPEFQQAL 256

Query: 263 MEAAEKARDAEREDTRREASQALAALKERGMQINEVSPDEIQRMREKAQPAIQTVIDAVG 322
           + +A++A + +R+    +  + +  +KE G+++       I  +  KA        DA+G
Sbjct: 257 VSSAQEAGNYQRKLVAEDQQKIIDGMKEAGVEV-------ITDLDRKA------FSDALG 303

Query: 323 QELFDQVQAEVEKAA 337
            ++ D    +V + A
Sbjct: 304 NQVRDMFVKDVPQGA 318