Pairwise Alignments

Query, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 632 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  239 bits (611), Expect = 1e-67
 Identities = 132/413 (31%), Positives = 227/413 (54%), Gaps = 3/413 (0%)

Query: 8   SSLLGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLAQNLQAGADSFPLLAVPFFILAGE 67
           +   G M LGMPIAF L L+  V         + + +Q + AG D + LLA+PFF+LAG 
Sbjct: 213 AGFFGGMALGMPIAFVLALSSLVFFMADPSLPMLVYSQQVMAGTDHYVLLAIPFFVLAGL 272

Query: 68  LMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALATLLLPMMR 127
           LM A G+S R+I +    FG  RGGLG + I A+   + +SGS LAD AA+  +++P +R
Sbjct: 273 LMEANGMSSRLIELLLRMFGRLRGGLGLITITATAFFSGVSGSKLADIAAVGGIIMPAVR 332

Query: 128 ERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGLIMGMGLIV 187
           +     + ++GL+A   ++A  IPP +  +I G V   SI+ LF+AG+VP +++ + L  
Sbjct: 333 KTKQDPNETAGLLACTAVMAETIPPCINMIIMGFVANISIAGLFMAGLVPAVVLAVSLAA 392

Query: 188 AWTLIARRIDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTPTEAAVVAAVY 247
               +  +I+ P +         R+L     AL++  +I  G+  G+ T TE +  A +Y
Sbjct: 393 VTIYVGTKIN-PDEAFDVRTPMFRLLGGALVALVMVAMIGKGVTSGVATSTEVSSFAVIY 451

Query: 248 ALAVSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMITLAQLPDEIAAMLGP 307
           AL V  L +REL    +  +  R++     ++F+ AAA+  ++ +T+ Q+P  ++  +  
Sbjct: 452 ALVVGWLAFRELTVKSVARLFVRSASMAGGILFIVAAASSLSFALTIQQIPQYLSEFMIG 511

Query: 308 LAQD--PKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYFGVMFVLIG 365
            A      + ++  +L+MI  G +L+  P ++I GP+L PIA + G++P++FG + V+  
Sbjct: 512 FAHSYGSTMFVMLSVLIMIVFGAILEGAPALIIFGPLLTPIASQLGVNPLHFGTVMVIAM 571

Query: 366 SIGLITPPVGTVLNVVGGIGRLRMETLVRGVMPFFLIYLVIVGLLIAVPSIIT 418
             GL  PPVG  L     I   +++ + R ++ +  +  V + +L+ VP+  T
Sbjct: 572 GFGLFAPPVGLGLFATCAITGTQVKDVARPMLKYLAVLFVTLVVLVLVPAFST 624