Pairwise Alignments

Query, 425 a.a., D-gluconate TRAP transporter, large permease component (from data) from Pseudomonas stutzeri RCH2

Subject, 426 a.a., Sialic acid TRAP transporter large permease protein SiaM from Azospirillum sp. SherDot2

 Score =  463 bits (1191), Expect = e-135
 Identities = 234/424 (55%), Positives = 321/424 (75%)

Query: 1   MTVVVFLSSLLGFMTLGMPIAFALLLTGSVLMWYLDFWDVQLLAQNLQAGADSFPLLAVP 60
           MT+ +FL SLLG M +GMPIA+ALLL G  LM +LD +D Q++AQNL  GADSFPL+AVP
Sbjct: 1   MTITIFLGSLLGAMAIGMPIAYALLLCGVALMIHLDLFDAQIVAQNLINGADSFPLMAVP 60

Query: 61  FFILAGELMNAGGISRRIIAMAQAYFGHKRGGLGYVAIAASVLLASMSGSALADTAALAT 120
           FF+LAGE+MN GG+++RI+ +A A  GH RGGLGYV I A+ ++AS+SGSA+AD AALAT
Sbjct: 61  FFMLAGEIMNTGGLAKRIVNLAMAMVGHIRGGLGYVTILAATVMASLSGSAVADAAALAT 120

Query: 121 LLLPMMRERGYPLSSSSGLVAAGGIIAPIIPPSMPFVIYGVVTGTSISQLFLAGMVPGLI 180
           LL+PMM   G+  + S+GLV+A  IIAPIIPPS+ FVIYGV    S+++LFLAG+ PG++
Sbjct: 121 LLVPMMVAAGHDRNRSAGLVSASAIIAPIIPPSIGFVIYGVAGNVSVTKLFLAGIFPGIL 180

Query: 181 MGMGLIVAWTLIARRIDEPKQEKASAAERRRVLVDGAAALMLPVIIVGGLRGGLFTPTEA 240
           + +GL  AW  ++R+ +     + S  E   +L +G  ALMLPVII+ GL+ G+FTPTEA
Sbjct: 181 LAVGLCGAWWYVSRKENLSPPPRRSLREVLAILREGVWALMLPVIIIVGLKFGVFTPTEA 240

Query: 241 AVVAAVYALAVSTLLYRELNWAGLVEVLTRASRTTASVMFLCAAATVSAYMITLAQLPDE 300
           AVVAAVY+L V+  +YRE++ A +   L  A++TT+ VMFL AAA VS+++IT+A LP  
Sbjct: 241 AVVAAVYSLFVAVCVYREMSVADIYPALLGAAKTTSVVMFLVAAALVSSWLITVANLPGM 300

Query: 301 IAAMLGPLAQDPKLLMVAIMLLMIAVGMVLDLTPTILILGPVLAPIAIKAGIDPVYFGVM 360
           +  +L PL  +  LL++A+M L++A+G  +D+TPTILIL P+L P+  +AGIDPVYFGV+
Sbjct: 301 VTDLLEPLMGNQTLLLLAMMALVVAIGTAMDMTPTILILTPILVPVCKQAGIDPVYFGVL 360

Query: 361 FVLIGSIGLITPPVGTVLNVVGGIGRLRMETLVRGVMPFFLIYLVIVGLLIAVPSIITVP 420
           F++  +IGLITPPVGTVLNVV G+ ++ ME +++GV PF L+ LV++ LL   PS++ VP
Sbjct: 361 FIINNAIGLITPPVGTVLNVVCGVSKVSMEGVIKGVWPFMLVQLVVLFLLTLFPSLVMVP 420

Query: 421 LAWL 424
            AWL
Sbjct: 421 AAWL 424