Pairwise Alignments

Query, 314 a.a., Topoisomerase IB from Pseudomonas stutzeri RCH2

Subject, 340 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  427 bits (1097), Expect = e-124
 Identities = 207/307 (67%), Positives = 247/307 (80%)

Query: 3   RGKFVYFGPNGERIRDDAAIQRINKLVIPPAYRDVWICPDPQGHLQATGRDARGRKQYRY 62
           R +F+Y   +G+R+RD   + RI  LVIPPAY DVWIC DPQGHLQATGRDARGRKQYRY
Sbjct: 26  RDRFIYLDADGQRVRDSETLARIAALVIPPAYTDVWICADPQGHLQATGRDARGRKQYRY 85

Query: 63  HSRWREIRDGNKYDRMLQFGEALPKLRQKLEKHLAAPELSREKVMALVVTLLESTLIRIG 122
           H++WRE+RD +KY RML F +ALPKLR +LE HLA P L REKVMALVV+LL+ TLIRIG
Sbjct: 86  HAQWRELRDQHKYGRMLAFAQALPKLRTQLEAHLARPGLDREKVMALVVSLLDHTLIRIG 145

Query: 123 NSRYARDNRSYGLTTLRTRHVDISGTSIRFHFRGKSGVEHEVTLRDRRLARLMRRCMELP 182
           N RY RDNRSYGLTTLR RHV + G++IRF FRGK GVEH VTL DRRLA L++RCMELP
Sbjct: 146 NQRYLRDNRSYGLTTLRNRHVQVKGSTIRFQFRGKRGVEHNVTLNDRRLANLLKRCMELP 205

Query: 183 GQQLFQYLDEDGQRRAVSSNDVNLYLREMTGSDFTAKDYRTWAGSALALERLRKLDSAPD 242
           GQ LFQYLDEDGQR +V S++VN +L+++TG+DFTAKDYRTWAGS+LAL  L+ L   P+
Sbjct: 206 GQALFQYLDEDGQRHSVGSSEVNQFLQQLTGADFTAKDYRTWAGSSLALNLLKPLAWEPE 265

Query: 243 SVAKQNLVETVKQVASQLGNTPAVCRQCYIHPAILDAFSAGDLAKPRAARKRKWLSAEEV 302
           S AK+ +   V+QVA++LGNTPAVCR+CYIHPA+L+ ++ G LA     R RK L  EEV
Sbjct: 266 SEAKRQVAAIVRQVATRLGNTPAVCRRCYIHPAVLEHYALGRLANLPKNRVRKGLDPEEV 325

Query: 303 ALLNFLQ 309
           ALL FLQ
Sbjct: 326 ALLLFLQ 332