Pairwise Alignments

Query, 314 a.a., Topoisomerase IB from Pseudomonas stutzeri RCH2

Subject, 348 a.a., DNA topoisomerase type I from Alteromonas macleodii MIT1002

 Score =  206 bits (524), Expect = 7e-58
 Identities = 107/274 (39%), Positives = 164/274 (59%), Gaps = 2/274 (0%)

Query: 5   KFVYFGPNGERIRDDAAIQRINKLVIPPAYRDVWICPDPQGHLQATGRDARGRKQYRYHS 64
           +F Y   +G+++  +  ++RI KLVIPP +RD +I  D +  +QA G D +GRKQY YH 
Sbjct: 28  RFYYRYASGKKVTGERVLKRIKKLVIPPNWRDTFISRDSKASVQAVGYDEKGRKQYIYHD 87

Query: 65  RWREIRDGNKYDRMLQFGEALPKLRQKLEKHLAAPELSREKVMALVVTLLESTLIRIGNS 124
           +W E +   K++R++ FG ALP+ R+     ++ P  ++E+  ALV  LL+ T  R+GN+
Sbjct: 88  KWHEQQQVKKFERLVAFGNALPEFRKHCLSLISQPTWTQERACALVCLLLDYTGARVGNA 147

Query: 125 RYARDNRSYGLTTLRTRHVDIS-GTSIRFHFRGKSGVEHEVTLRDRRLARLMRRCMELPG 183
           +Y+++N +YGLTTLR +HV      S+   + GK G    + + D  LA L+  C +  G
Sbjct: 148 QYSKENNTYGLTTLRRKHVQAQCDDSVELAYIGKHGKPRTLKVNDPELASLVCDCAQQQG 207

Query: 184 QQLFQYLDEDGQRRAVSSNDVNLYLREMTGSDFTAKDYRTWAGSALALERLRKL-DSAPD 242
             LF+Y DE+ Q   V+S DVN ++ +     F+ KD+RTWA S  AL  L  + +   +
Sbjct: 208 YCLFRYQDENNQWHDVTSEDVNAFIHKELSEQFSCKDFRTWASSRFALTNLPSVYEQIAN 267

Query: 243 SVAKQNLVETVKQVASQLGNTPAVCRQCYIHPAI 276
           S  K+      K VA++LGNTP VCR+ YIHP +
Sbjct: 268 SRTKKWESTLSKCVAAELGNTPTVCRKYYIHPKL 301