Pairwise Alignments

Query, 420 a.a., tricarboxylate porin (from data) from Pseudomonas stutzeri RCH2

Subject, 420 a.a., proline-specific outer membrane porin D from Pseudomonas putida KT2440

 Score =  254 bits (648), Expect = 4e-72
 Identities = 164/432 (37%), Positives = 230/432 (53%), Gaps = 36/432 (8%)

Query: 5   VRRSPAPARLALAVAAASLAPLAQAAFIEDSSATLQTQNIYLNRDFRE--GSGQSKREEW 62
           +R +  P R  LA  A  L P    A  E    +L ++N +L+ DFR   GSGQ+ R+EW
Sbjct: 2   IRATHGPGRALLATLA--LWPALSHA--EAPGWSLLSRNYFLHSDFRSPSGSGQNYRQEW 57

Query: 63  TQGFILDVQSGFTEGTVGVGLDALGMLGIKLDSGGGRTGTDLLPVHDDGSTPDEFSRLGL 122
            QGFI +V+SGFTEGTVGVG+DA G LG+KLD G G +GT LLP   DG    E+S  G 
Sbjct: 58  AQGFIGEVRSGFTEGTVGVGIDAHGFLGLKLDGGRGHSGTGLLPRDSDGRAESEYSSAGA 117

Query: 123 TAKAKIAETELRYGSHIPEMPVVKASDSRTLPQVFEGGTATSKDIEGLTLIGGRLDKVID 182
             K ++  T+LRYG  + E PV    D R  P+   G    + D     L  GR      
Sbjct: 118 ALKMQLGNTQLRYGEMMVETPVFDTGDKRLHPEYATGWWVENTDQPDWRLQAGRF----- 172

Query: 183 RASTNSQDLQLNNKNSRFAGAAEADH---LTFAGAEYAFNKNLTGRYYYGELDDVYRQHF 239
             + N+QD   ++ +  F+G     H   ++ AGA +A N       Y G+L++ +RQ +
Sbjct: 173 -TAFNNQD--NSSTHDDFSGYGATTHNRAISLAGATFAPNGPFGAALYAGQLENTWRQAY 229

Query: 240 FGLLAVKPLTDNSALSADLRVMFSDDTGAANAGKIDNQAWNGMLGYSLGGHKVSLGYQQM 299
             L   +    N  L  +L    + DTG A+AG ID  A++ +  YS G   +S+ YQ++
Sbjct: 230 LNLNLAQ---GNWRLDGNL--YKTRDTGNASAGAIDTLAYSLLAKYSFGAQALSVAYQKV 284

Query: 300 RGDTGYAYIDGSDPFLVNFVQINDFANADERSWQARYDYNFAAMGIPGLTFLTRYVS--- 356
            GDT + ++ G   +L N ++  DF    E SWQ RYD NFA +G PGL+ + RYVS   
Sbjct: 285 EGDTPFDFVGGDSIYLANAIKYADFNGPGEHSWQLRYDLNFATLGAPGLSLMGRYVSGRG 344

Query: 357 --GDNAEYNG------GSNGSEWERDIELKYVVQSGPLKNVAVRMRNAMFRSDFAR---D 405
             G +A   G      G  G  WERDI+LKYVVQSG  K++++   +   R++ A+   D
Sbjct: 345 IDGSHAPAGGAYVNQYGDGGKHWERDIDLKYVVQSGAAKDLSLSFSHVSHRANQAQAGDD 404

Query: 406 ADENRLIVSYSL 417
            D   LI+ Y L
Sbjct: 405 IDRIYLIIEYPL 416