Pairwise Alignments

Query, 420 a.a., tricarboxylate porin (from data) from Pseudomonas stutzeri RCH2

Subject, 417 a.a., putative Porin from Pseudomonas putida KT2440

 Score =  380 bits (975), Expect = e-110
 Identities = 196/406 (48%), Positives = 267/406 (65%), Gaps = 17/406 (4%)

Query: 25  PLAQAA-FIEDSSATLQTQNIYLNRDFREGSG---------QSKREEWTQGFILDVQSGF 74
           P+A AA FIEDS   LQ +N+Y N +FR+  G         +S+R EW QGF+LD QSGF
Sbjct: 19  PVAGAAGFIEDSKLKLQLRNVYFNENFRDEQGMSARAAATAKSERVEWAQGFLLDYQSGF 78

Query: 75  TEGTVGVGLDALGMLGIKLDSGGGRTGTDLLPVHDDGSTPDEFSRLGLTAKAKIAETELR 134
           T+GT+G+G+DA+G+LG++LDSG GR+GT LLPVHDDG   DEF+  G+TAKA++  T ++
Sbjct: 79  TQGTLGLGVDAMGLLGVRLDSGRGRSGTGLLPVHDDGRAADEFASAGITAKARLGSTVVK 138

Query: 135 YGSHIPEMPVVKASDSRTLPQVFEGGTATSKDIEGLTLIGGRLDKVIDRASTNSQDLQLN 194
           +G+ +P+ PV+  +D+R LPQ ++G   TS DI+ LTL  G LD+   R S++S  L L+
Sbjct: 139 HGTLLPKTPVLVYNDARLLPQTYQGTQLTSTDIDNLTLTAGHLDRFKQRDSSDSTGLYLD 198

Query: 195 NKNSRFAGAAEADHLTFAGAEYAFNKNLTGRYYYGELDDVYRQHFFGLLAVKPLTDNSAL 254
                + G A  D  +FAGA+YA +K L   Y++GEL+  YRQ F GL+   PL     L
Sbjct: 199 G----YGGPASGD-FSFAGADYAVSKQLRLSYFHGELEHFYRQDFAGLVHDLPL-GGGVL 252

Query: 255 SADLRVMFSDDTGAANAGKIDNQAWNGMLGYSLGGHKVSLGYQQMRGDTGYAYIDGSDPF 314
           + DLR   S D+G A  G IDN  ++G L Y+  GH V  GYQ + G+ G  YI G+  +
Sbjct: 253 TTDLRYFKSRDSGTAYGGGIDNDMFSGQLSYAHSGHTVGAGYQVLDGEAGLPYISGATVY 312

Query: 315 LVNFVQINDFANADERSWQARYDYNFAAMGIPGLTFLTRYVSGDNAEYNGGSNGSEWERD 374
             + V I  F   +E++W A Y YNFAA G+PGLTF+TRY+SGDN   +GG    EWERD
Sbjct: 313 SFSNVGIGKFIEEEEKTWMASYAYNFAAAGVPGLTFMTRYLSGDNGR-SGGEGIKEWERD 371

Query: 375 IELKYVVQSGPLKNVAVRMRNAMFRSDFARDADENRLIVSYSLPIW 420
            E+ YVVQ GPLK + V++RN ++RSDFAR  D NRL ++Y + IW
Sbjct: 372 AEIAYVVQGGPLKGLGVKLRNYVYRSDFARGRDSNRLYLTYDIAIW 417