Pairwise Alignments

Query, 560 a.a., hypothetical protein from Pseudomonas stutzeri RCH2

Subject, 2408 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

 Score =  255 bits (652), Expect = 1e-71
 Identities = 187/561 (33%), Positives = 294/561 (52%), Gaps = 24/561 (4%)

Query: 7   SLGLVRDELFATMEEAEQSLEHFIIDRNNGGLLQQAVENLKQVRGTLNLIELTGAELLAQ 66
           +L  V+ E+  T+++A Q+LE F+ +  +   ++  +  + QV GTL ++E  GA LLA+
Sbjct: 9   ALEWVKGEIAETLKQARQALEAFVENPQDPTRMRFCLTYVHQVHGTLQMVEFFGAALLAE 68

Query: 67  EILQLATDIPVGAGEDRDVQLAALSNALYVLRRYLESVDASRQEIPELLLPAINVLRQAC 126
           E+ QLA  +  G   ++   L  +  A+  L  YL+ + ++R+++P ++LP +N LR A 
Sbjct: 69  EMEQLARALLEGRVTNQGEALEVMMQAILQLPVYLDRIQSARRDLPMVVLPLLNDLRAAR 128

Query: 127 AQPALPESFFFSVRLDHARPAVDVPA----RSGAAPVAEARRLRQMYQVGLLGFIREDNL 182
            +  L E+  FS  L    PA+   +    R+   P A  R+LRQM QV L+G IR  ++
Sbjct: 129 GEKLLSETSLFSPDLSGRAPALPQESVERLRTNELP-ALLRKLRQMLQVALVGVIRNQDM 187

Query: 183 SASLKLMGRALTRLDHLFIESPASRLCWIGSAALESQLDGQLLPRKSRKQLFSRLDRELK 242
             +L  M R   RL+ L  ++P   L  I S  +E    G++    S + L  ++D++LK
Sbjct: 188 PTNLGYMARVFARLEVLCKDAPLEALWQIASGMVEGLASGEVSHGTSVRTLLRQVDKQLK 247

Query: 243 QVLGNPA----YEAPRSLLKELLYVVALADTQGPIASQVRQVFSLSPLPFTDHLLEEESQ 298
           +++   A      AP  L+K LL+ VA A  Q P    ++Q + L        ++++E  
Sbjct: 248 RLVEEGADGLNQAAPDELIKNLLFYVAKAPGQTPRIQSLKQQYRLDEALPDSAVVDQERA 307

Query: 299 RLAGPGQAVMRSLSSAIREELASLKDLLDLIERGTAQAEA-YSNLHNLLGKMAKTLGMVG 357
           +LAGP +  MRS+ +A+ EEL  +KD LDL  R   +     ++L   L ++A TL ++G
Sbjct: 308 QLAGPDRGAMRSVVAALCEELVRVKDSLDLFVRSDRKIIGDLASLEVPLKQIADTLAVLG 367

Query: 358 LSSAASTLQAQLGDVSGWSLAH-APEPQVIQRLADAVLYVESMVASLERGDRRESKPQVA 416
            +     +  Q+  V   +    AP+  V+  +A A+LYVE+ +A +  G   E      
Sbjct: 368 FAQPRKIVLDQIVLVQSVAQGRQAPDDAVLMDIAGALLYVEATLAGMVGGPVEERN---- 423

Query: 417 RPGMEAEAFANHQLTEARIVVIDEATAGLALAKRAITAYLESNGEKLHLANVPFSLQAVR 476
               EA       + +   +VI EA  GL  AK AI  ++ S     HLA VP  L  VR
Sbjct: 424 ----EASQLPTTDVAQIHQLVIREARNGLEQAKDAIIEFIASQWNHEHLARVPELLTQVR 479

Query: 477 GGLRFLEQERAADLIGACADFIQKQMLESNQMPPEQLLETLADALTSLEYYLEGGAVLRR 536
           GGL  +  ERAA L+ AC  +IQ Q+L    +P  Q L+TLADA+TS+EYYLE    L  
Sbjct: 480 GGLAMIPLERAAALLQACNGYIQDQLLARKAVPDWQSLDTLADAITSVEYYLER---LSE 536

Query: 537 DDSRVS--VLDLASESVRALG 555
           D       +LD+A ES++ LG
Sbjct: 537 DCGTQGDLILDVAEESLQNLG 557



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 401  ASLERGDRRESKPQVARPGMEAEAFANHQLTEARIVVIDEATAGLALAKRAITAYLESNG 460
            A  E     E+ P    P  EA+   +H++ E   + +DEA   +  A  A+  +L    
Sbjct: 1209 AEAEAEAEAEAWPMEDAPADEAQDELDHEMVE---IFLDEAVDLMESAGHALDRWLADPA 1265

Query: 461  EKLHLANVPFSLQAVRGGLRFLEQERAADL 490
             ++ L+ +   L  ++GG R        DL
Sbjct: 1266 NQMALSALLRDLHTLKGGARMAAIRPIGDL 1295