Pairwise Alignments

Query, 628 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

Subject, 604 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  427 bits (1099), Expect = e-124
 Identities = 242/600 (40%), Positives = 342/600 (57%), Gaps = 19/600 (3%)

Query: 16  SLLCMATLAEAAPRHALTLYDEKPKYPADFQHFEYVNPDAPKGGTLRQAG---FGSFDSL 72
           SL+  A  A AA  H   L+D+  KY  DF+ F+YV+P APKGG LR        +FD  
Sbjct: 8   SLMVCAVPAWAA--HGYALWDDL-KYGPDFKAFDYVDPAAPKGGELRLVSNLRVSTFDKY 64

Query: 73  NPFINKGVAADDI-SLIYDTLTTNSLDEPFTVYGLLAEKIEKGPNNSWVRFHLRPQARFH 131
           NPF  KG A   + SL++DTL T S+DE  + YGLLAE +   P+   V F LRP+ARFH
Sbjct: 65  NPFTIKGSAPAYLDSLLFDTLLTGSMDETASGYGLLAEDVTVAPDRRSVTFRLRPEARFH 124

Query: 132 DGEPVKAEDVVFTFETLMSK-GAPHYRGYYADVEKVVAESPRRVRFDFKHAGNRELPMIL 190
           +G PV+A DV  +++TL+    +P Y+    +V+       R +RF FK   NRELP+I+
Sbjct: 125 NGMPVEAADVKHSYDTLIGPYTSPGYKTLLQEVDGADVIDARTIRFRFK-TPNRELPLIV 183

Query: 191 GQLPVLPKHWWED----RDFSSGSLEVPLGSGPYRVDKIQAGRSIRYARVEDYWGKDLPV 246
           G LP+  + W  +    + F    +++P+GSG Y++  ++ G+ I Y R   YW +DLPV
Sbjct: 184 GSLPIFSRAWGVENGKAKPFDQVVMDIPIGSGAYKIGPVRFGKDITYVRDPGYWARDLPV 243

Query: 247 NRGFYNFDRINFDYYRDNTVALQAFKAGHFDYWFETSAKNWATAYDIAAVRDGRIVKDEI 306
           NRG +NFDRI    Y+DNT  L+A KAG FD     SA +WA   +      G +VK E 
Sbjct: 244 NRGSHNFDRITVKIYKDNTARLEALKAGEFDMMSFYSAGDWARRVNGKRFNTGELVKREF 303

Query: 307 RNYNPTGMQGFIFNIRRPQLEDRRVREALGLLFDYEWTNRQLFNGAYTRTRSYFDNSELA 366
           ++  P G Q F+ N RR +L+D RVREALGL  DYEW NRQ+F G Y R    F N++  
Sbjct: 304 QHKKPAGFQSFVLNSRRDKLKDPRVREALGLALDYEWMNRQMFYGGYPRVTDLFGNTDCE 363

Query: 367 SSGLPDADELKVLEPLRGKIPDEVFDKAFELPHTEGNG-VIREQQRQAYRLLTEAGWKVE 425
           + GLP  +E  +LEP RGKIPD  F   +  P TEG G  +R   R+A  LL EAGW+  
Sbjct: 364 AKGLPSPEEKALLEPWRGKIPDASFGPMYTPPTTEGEGHSLRNNLRRARDLLKEAGWEYR 423

Query: 426 NDRMLDAQDKPVKLEFLLVQAEFERVLLPYKRNLADLGIELEIRRVDVSQYINRLRSRDY 485
           +  + +A+ + + LE+L  +    R + P+ RNL  LGI L    VD + Y  RL   D+
Sbjct: 424 DGALRNAKGERMTLEYLDSKEGGVRTVSPWVRNLEKLGITLNFATVDFALYQERLDRFDF 483

Query: 486 DMIVSGFGQSNSPGNEQREYWHSASADNPGSRNFIGLKDPAIDSLVEGLIGADSRKELVT 545
           D+    F  +N+PG    E + S +A    S N++G+  PAID+L++ ++ AD++ EL+ 
Sbjct: 484 DITTINFPGTNNPGQSLLEIFGSKAAKTESSGNYMGVSTPAIDALLKDIVDADTKAELMP 543

Query: 546 HTRALDRALLWGHYVVPNWHIKTWRVAY--WN---HLAHPQVTPKQDIGLMTWWRKPDAK 600
             RALDR ++  HY++P W + + R+ Y  W        P     +D  + TWW K   K
Sbjct: 544 ACRALDRVIMHSHYLIPQWTLTSHRIVYDDWRLSFKSPMPPYAGGEDWVMGTWWAKQPPK 603