Pairwise Alignments

Query, 628 a.a., ABC-type oligopeptide transport system, periplasmic component from Pseudomonas stutzeri RCH2

Subject, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

 Score =  553 bits (1424), Expect = e-161
 Identities = 270/576 (46%), Positives = 377/576 (65%), Gaps = 15/576 (2%)

Query: 40  KYPADFQHFEYVNPDAPKGGTLRQAGFGSFDSLNPFINKGVAADD--------ISLIYDT 91
           KYPA F HF++VNP APKGGTLR   FG+FD+LNP+  KG +           IS + + 
Sbjct: 34  KYPATFTHFDWVNPQAPKGGTLRAMAFGTFDTLNPYTFKGSSPITTPNFQQYGISELNEP 93

Query: 92  LTTN------SLDEPFTVYGLLAEKIEKGPNNSWVRFHLRPQARFHDGEPVKAEDVVFTF 145
           L         S DEP + YGL+A  +E   + SWV F+LRP+AR+HDG+P+ + DV F++
Sbjct: 94  LMVGTGQYDPSGDEPTSSYGLIARSVEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSY 153

Query: 146 ETLMSKGAPHYRGYYADVEKVVAESPRRVRFDFKHAGNRELPMILGQLPVLPKHWWEDRD 205
            TL+  G P YR    +V++V    P R+RF FK AGN  L + LG++PVLPKH+W+ RD
Sbjct: 154 RTLLKDGHPIYRTNLQEVQRVDILGPLRIRFVFKRAGNPLLILRLGEMPVLPKHYWQKRD 213

Query: 206 FSSGSLEVPLGSGPYRVDKIQAGRSIRYARVEDYWGKDLPVNRGFYNFDRINFDYYRDNT 265
           F + + E PLGSGPYR+ ++Q GR + + RV++YWGKDL VNRG YNF+R+ +++YRD T
Sbjct: 214 FKATTFEPPLGSGPYRITQVQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDAT 273

Query: 266 VALQAFKAGHFDYWFETSAKNWATAYDIAAVRDGRIVKDEIRNYNPTGMQGFIFNIRRPQ 325
           VA +AFKAG FD + E  AKNWA  Y+  AVR G ++K +I +  PT  QG   N RR  
Sbjct: 274 VAFEAFKAGEFDIYIEHQAKNWANGYNFPAVRRGEVIKAQIPHSIPTQTQGLFMNSRRAA 333

Query: 326 LEDRRVREALGLLFDYEWTNRQLFNGAYTRTRSYFDNSELASSGLPDADELKVLEPLRGK 385
             D RVR+ALGL+ D+EWTNR LF+ AY R+ SY+ NSE A+SGLP   E  +L P R +
Sbjct: 334 FSDPRVRQALGLMLDFEWTNRALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQ 393

Query: 386 IPDEVFDKAFELPHTEGNGVIREQQRQAYRLLTEAGWKVENDRMLDAQDKPVKLEFLLVQ 445
           +P ++F + +++ HT+G G+ R+  RQA  LL EAGWK+   R++D++ + +++E LLV 
Sbjct: 394 LPAKLFSEPYKVSHTDGRGISRQTLRQALGLLAEAGWKLHGQRLVDSKGQQLRMELLLVN 453

Query: 446 AEFERVLLPYKRNLADLGIELEIRRVDVSQYINRLRSRDYDMIVSGFGQSNSPGNEQREY 505
              ER+L PY  NL+ +GI+  +R VD +QY  RL   D+DMI+    Q+ SPG EQ  Y
Sbjct: 454 PNLERILQPYVENLSSIGIDARLRTVDRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLY 513

Query: 506 WHSASADNPGSRNFIGLKDPAIDSLVEGLIGADSRKELVTHTRALDRALLWGHYVVPNWH 565
           +HS+ A   GS+N+ G+KDP +D L++ L+ A +R + V   RALDR L W +Y++PNW+
Sbjct: 514 FHSSQAATKGSKNYAGVKDPVVDHLLDTLLAARTRDDQVAAARALDRVLSWHYYMIPNWY 573

Query: 566 IKTWRVAYWNHLAHPQVTPKQDIGLMTWWRKPDAKA 601
           +   R+AY N  A    TP   +GL +WW K   KA
Sbjct: 574 LDNHRLAYRNRFAF-VTTPPYTLGLNSWWIKTSEKA 608