Pairwise Alignments

Query, 357 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 306 a.a., oligopeptide ABC transporter permease OppB from Escherichia coli ECRC62

 Score =  165 bits (417), Expect = 2e-45
 Identities = 104/353 (29%), Positives = 174/353 (49%), Gaps = 48/353 (13%)

Query: 1   MLAYIFRRLLLIIPTLFGILLINFIIIQAAPGGPVEQAIAKLEGFEGATSRIAGGGSEVA 60
           ML +I RR L  IPTLF ++ I+F +++ APG P                          
Sbjct: 1   MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP-------------------------- 34

Query: 61  VAGTSYRGAQGLDPELVAEIERLYGFDKPPVERFWIMLSNYLRLDFGESF-FRDAKVTDL 119
                + G + L PE++A IE  Y  + P + +++  L      DFG SF ++D  V DL
Sbjct: 35  -----FTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDL 89

Query: 120 IIEKMPVSISLGLWSTLIMYLASIPLGIAKATRHGSKFDVWTSSAIIVGYAIPAFLFAIL 179
           +    PVS  LG  +  +  +  +  G+  A +  +K+D       + G  IP+F+ A L
Sbjct: 90  VASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPL 149

Query: 180 LIVLFAGGSYWNWFPLRGLTSANFDDLSLGGKIIDYFWHLALPVTALVIGNFATLTLLTK 239
           L+++FA     +W P  G           GG +      + LP+ AL +   A++  +T+
Sbjct: 150 LVMIFA--IILHWLPGGGWN---------GGALK----FMILPMVALSLAYIASIARITR 194

Query: 240 NSFLDEINKQYVITARAKGLSKNRVLYGHVFRNAMLIIIAGFPAAFIGMFFTGSLLIEVI 299
            S ++ ++  ++ TARAKGL   R++  H  + A+L +++    AF+G+  TGS++IE I
Sbjct: 195 GSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGPAFVGII-TGSMVIETI 253

Query: 300 FSLDGLGLLSFEAAINRDYPVVFGTLFLFTLLGLVVKLIGDLTYTLVDPRIDF 352
           + L G+G L    A+NRDY +V     L   L ++   I D+ Y ++DP+I +
Sbjct: 254 YGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306