Pairwise Alignments

Query, 357 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 316 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  153 bits (387), Expect = 5e-42
 Identities = 105/354 (29%), Positives = 172/354 (48%), Gaps = 47/354 (13%)

Query: 1   MLAYIFRRLLLIIPTLFGILLINFIIIQAAPGGPVEQAIAKLEGFEGATSRIAGGGSEVA 60
           MLA + RRL+ +I TLF + LI ++++   PG P                          
Sbjct: 1   MLAVLIRRLVSLIITLFAVSLIIYVVMGLLPGDPA-----------------------AI 37

Query: 61  VAGTSYRGAQGLDPELVAEIERLYGFDKPPVERFWIMLSNYLRLDFGESFFRDAKVTDLI 120
           + GTS        P+ +A +++  G D+P   R+   L+   R D G+S+     V  LI
Sbjct: 38  MLGTS------ASPDTLAALQKQMGLDQPLPLRYLHWLAGVFRGDLGQSYTYGVPVAGLI 91

Query: 121 IEKMPVSISLGLWSTLIMYLASIPLGIAKATRHGSKFDVWTSSAIIVGYAIPAFLFAILL 180
           IE++ V++ L L +  +    +IPLG+A A       D        VG A+P F   +LL
Sbjct: 92  IERLAVTLPLALLAIFLSVTIAIPLGVAAAQNRNGALDFAAGLFSHVGIAVPGFWVGLLL 151

Query: 181 IVLFAGGSYWNWFPLRGLTSANFDDLSLGGKIIDYFWHLALPVTALVIGNFATLTLLTKN 240
           I++F+  +   W P  G    +    S G         L LP  AL +     LT + ++
Sbjct: 152 IIVFS--TTLGWMPSGGFPGWS-PSFSAG------LVALVLPAIALALSQAGVLTRVCRS 202

Query: 241 SFLDEINKQYVITARAKGLSKNRVLYGHVFRNAMLIIIAGFPAAFIGMFFT----GSLLI 296
           + L+ +N+ +V TARAKGLS+   L+ H   NAM+ ++       IG+ FT    G++L+
Sbjct: 203 AVLEVMNEDFVRTARAKGLSERVALWRHAVPNAMIPVV-----TMIGLQFTFLIAGAVLV 257

Query: 297 EVIFSLDGLGLLSFEAAINRDYPVVFGTLFLFTLLGLVVKLIGDLTYTLVDPRI 350
           E +F+L GLG L+++A   RD  V+   +  F+ L +++  + D+ Y  +DPR+
Sbjct: 258 ENVFNLPGLGRLAYQALTQRDIVVMQSVVLFFSALVIIMNFVVDIAYLFIDPRL 311