Pairwise Alignments

Query, 304 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

Subject, 254 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 46.2 bits (108), Expect = 8e-10
 Identities = 69/288 (23%), Positives = 110/288 (38%), Gaps = 46/288 (15%)

Query: 1   MNAARLVLA-LWLTLCGALAQAEIVKVRAFDDIIESGVLKVAMYEKFPPYSYLHDGEPRG 59
           M  ARL+LA L LT     A A     R F DI  SG L VA   +FPP++Y    +  G
Sbjct: 1   MKLARLLLASLLLTQVIFTASA-----RPFPDIQASGKLVVATGGEFPPFNYFEGKKLTG 55

Query: 60  VDVELARKLAEGLGLKLQVLWVTPDET---LDDDLRNFIWKGHYLRPDVLADVMLRVPYD 116
            ++E+A  + + +GL ++   +  D     L  D  + +   H + P+    V       
Sbjct: 56  FEIEIAEIVVKKMGLAIEWKTIGFDSLLAGLQQDRWDIVVSSHGITPERAKAV------- 108

Query: 117 REFAYKRNELGEVINELVVMFGPYQRERWQAAYDDRRIDEVPSVAIFQYHPIGVEVDSVP 176
            +FA      G  I                      R   +   A      +GV+  S  
Sbjct: 109 -DFASPHYCSGSSIVS--------------------RDPAIRGAADLTGKVVGVQTGST- 146

Query: 177 SFYLSSVFEGRLAKNTHHYPSVSQAFAAMQQGEVDATMAMRGEVEWLLAKADDEHLKLAE 236
             YL +V +    K   ++P       A+  G VDA +  +      +      +LKL +
Sbjct: 147 --YLENVRKLTKPKEIKNFPQDRDVRTALATGRVDAWVTDKFVALAAVKSNPQANLKLGD 204

Query: 237 NAYPNMGKQVWDLGMAVHESNRQLAYALEEALEPLILEGELAKLYARH 284
             +      V  +  AV + N  LA A ++AL   + +G  A +  R+
Sbjct: 205 PLF------VERIAAAVGKGNTALAAAYDKALAEALADGSYAAVSNRY 246