Pairwise Alignments

Query, 724 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

Subject, 715 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  298 bits (762), Expect = 8e-85
 Identities = 214/742 (28%), Positives = 354/742 (47%), Gaps = 60/742 (8%)

Query: 6   SIQQRIAITGGLCLLATAGILIGYSVYLASTTQQLVSGRVSQQAQEDALQTLQHLGGKYA 65
           SIQ +I +  GLCLL    +L+G S+Y    + Q V     Q   E A   ++  G   A
Sbjct: 7   SIQWKITLLAGLCLLGIVTLLVGLSLYRMEQSSQQVKASSMQMLDEAAQARIEAQGEVQA 66

Query: 66  GEIRSEFTEALEAARGMAT-TFAVGKSGSTNSGGLQIGRDEVNSILLNVLKSQPDFNGTY 124
             IR +F +A +   G +     + +            R+++   +   L++ PD  G  
Sbjct: 67  LGIRRQFMDAYQYGHGFSRQVLFLREQAEKRFLDAFDTREDLTRQVKAALQANPDLLGLS 126

Query: 125 SCWEPDAIDGQDFLFTDGQNGNNGQTGRFTPYWTRGADGKIAVQPLVEYDTMDKH--PNG 182
             +E +A+DG+D LF       +   GRF  YW++   GK+    L E D  D    P+G
Sbjct: 127 LVFEANALDGKDELFAGQAELGSNDKGRFALYWSQPTPGKLESMALPESDMSDTSVGPSG 186

Query: 183 VLKGGWYIGPRETLKESVLGPLPYIVQGKQVWLATLSVPIIVDGRFTGVAGTDYNLDFVQ 242
                W+  PR  LK  V+ P  Y + G+ V + ++  P++ +G+       D NL+ +Q
Sbjct: 187 EKANAWFTCPRTLLKPCVIEPYFYRINGQNVLMTSIVFPLMANGKVIASLSVDINLNSLQ 246

Query: 243 QISQEVSAKLFDGQGEVAIISDQGLIVAESRFPNLIGQHFQKVLPDGWQTALTSVQKGEE 302
            +SQ+ S KL+DGQ +V+I+S  GL+   S   + + Q   +V        + ++     
Sbjct: 247 AVSQQASQKLYDGQTQVSILSPTGLLAGYSPDASKLSQRLDQVDTANGAQLIGALASSTH 306

Query: 303 LARLDDNGMVVVFAPIELGRTGKPWSMMLKIDKEIVLAKATELKAEMDAQSARSMLQQIG 362
           +  L  +  + V AP      GKPW ++L + +++++  A  LKA+MDA++ R  L ++G
Sbjct: 307 IRSLRTDHQLKVLAPFAPIPEGKPWGVLLDVPEKVLVGPAEALKAQMDAENTRGTLLELG 366

Query: 363 AGVLISLLAVIALWISSRALALPIRKAAQLAGAIQ--KGDFSQRMAHQSADEVGQLSASL 420
            G+L +++ +I +W+ +R++  PI   A +   I   +GD ++R+A+   DE+GQL+   
Sbjct: 367 LGLLAAVVGLILVWLMARSVTRPILGVAHMLEDIASGEGDLTRRLAYDKQDELGQLAGWF 426

Query: 421 DRMADSLQEQVHVAERISQGDLAVEVRLASEQDQLGLALRRMVDNLNGLVSQVQQSSELI 480
           +R  D LQ  +   +R             S QD  G A     D    + +Q     E  
Sbjct: 427 NRFLDKLQPIIAEVKR-------------SVQDARGTA-----DQSAAIATQTSAGMEQQ 468

Query: 481 NDKAGRVTTLSQDLSNGATESASAVTEISATVNQMAGQIRQTSEYASEANALSRNS---- 536
             +  +V T S               E+SAT   +A    Q ++ A +A+  +R+     
Sbjct: 469 YRQVDQVATASH--------------EMSATAQDVARSAAQAAQAARDADQATRDGLTVI 514

Query: 537 EHSARSGNELMVSLKAAMQEIN---QSGLDITNIIRAIEEIATQTNLLALNAAIEAARAG 593
           EH+  +   L   +  AM ++     +   I +++  I  IA QTNLLALNAAIEAARAG
Sbjct: 515 EHTTHNIGALASDMSTAMTQVEGLAANSEKIGSVLEVIRGIAEQTNLLALNAAIEAARAG 574

Query: 594 EHGRGFAVVADEVRQLAARSAEAAQRSTRLIQE--------------SNARTIKG-MEIT 638
           E GRGFAVVADEVR LA R+ E+ +  TRL+ E              ++ R  +G +E  
Sbjct: 575 EAGRGFAVVADEVRNLAQRTQESVE-ETRLVIEHLQNGTEAVVGSMGNSYRQAQGSVEQV 633

Query: 639 DDTARALEAIVQGAAQVSQLVDEIASASSQQASGIEQVSQAIGQIDEVVHHNSTNSEQST 698
                AL  I      +S +  +IASA+ +Q++  E+++  +  I +V    S  + +S 
Sbjct: 634 GQAVTALRQIGDAVTVISDMNLQIASAAEEQSAVAEEINNNVATIRDVTESLSEQANESA 693

Query: 699 QAAQELTQQAQQMIVQVGRFKV 720
           + +Q L   A Q    + +F+V
Sbjct: 694 RVSQALNSLANQQQGLMDQFRV 715