Pairwise Alignments

Query, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  245 bits (625), Expect = 4e-69
 Identities = 153/411 (37%), Positives = 236/411 (57%), Gaps = 10/411 (2%)

Query: 111 YQSVRTRPQPEQIRAAEALYAQLRDGRGAPTLRSSVGLRERLALLAAAGAAGGVVVGTVL 170
           Y+   T+    Q+ + +AL   +   +G   L++S  +      +  A AA    + TV 
Sbjct: 235 YRDAVTQFGNAQLASEQALQRMVE--QGTVLLQASQMMTASQTEVRDAAAAQAKTLLTV- 291

Query: 171 AASPIAATLAGLALGGAAAVAAATALL-PLSRLARQARQVGDNPVSQLIYTGRRDEIGQI 229
                 AT+  LALG  AA A    ++ PL +  R A +V    ++Q +   RRDE+GQ+
Sbjct: 292 ------ATVLALALGLLAAWAITRQIIIPLRQTLRAAERVASGDLTQSLQVQRRDELGQL 345

Query: 230 EFAMKMLETEAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQM 289
           + +M  +      ++G I D   Q++  A +L      ++     Q+ ETD +ATA+ QM
Sbjct: 346 QASMHRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQM 405

Query: 290 SASVQEVALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHS 349
           +A+V EVA NA++ +E A  AD +A +G  VVG   + I RLA+++  ++E ++ L+  S
Sbjct: 406 TATVHEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTES 465

Query: 350 QEISRVLDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQ 409
            +I  VLDVI  +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +T +I+
Sbjct: 466 DKIGSVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIE 525

Query: 410 RMIGSLQTGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVD 469
            +I  LQ+G +    VM  SR+  + SV    +A  SL  I   V+ I AM+ QIA A +
Sbjct: 526 ELIAGLQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAE 585

Query: 470 QQSSVGEEISQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQF 520
           +Q++V EEI++S++++R  SD+  A+   +  ++  +A L   +  LV +F
Sbjct: 586 EQTAVAEEINRSVMNVRDISDQTSAASEETASSSVELARLGTHLQGLVGRF 636