Pairwise Alignments

Query, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 643 a.a., Methyl-accepting chemotaxis protein PctB from Pseudomonas putida KT2440

 Score =  210 bits (535), Expect = 1e-58
 Identities = 123/348 (35%), Positives = 196/348 (56%), Gaps = 2/348 (0%)

Query: 175 IAATLAGLALGGAAAVAAATALLPLSRLARQARQV--GDNPVSQLIYTGRRDEIGQIEFA 232
           IA  +A  A+ G   +     + PL+ + R  R +  G+  +++ +    +DE G++  +
Sbjct: 294 IAMLIAVAAIAGLLGLLIPVLMSPLTTMGRAMRDIAEGEGDLTRRLAVQNKDEFGELATS 353

Query: 233 MKMLETEAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSAS 292
                    A +  ++ ++R + D +  ++ A + S   +  Q   T+ +A AI ++ A+
Sbjct: 354 FNRFVERIHASISEVSSATRLVHDLSEKVVSASNASIIGSEEQSMRTNSVAAAINELGAA 413

Query: 293 VQEVALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEI 352
            QE+A NA   ++ A+ A  +A  GREVV    S++T L+  I ++   I  L   + EI
Sbjct: 414 TQEIARNAADASQHASGASEQAHGGREVVEEAISAMTALSQRISESCAQIETLNASTDEI 473

Query: 353 SRVLDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMI 412
            ++LDVI GI++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT  +  +I RMI
Sbjct: 474 GKILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHRMI 533

Query: 413 GSLQTGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQS 472
            SLQ G+REAV  M  S+  +E +V  A+QA   L+ +  R+ EI  M+  +A A ++Q+
Sbjct: 534 TSLQVGSREAVHTMNTSQVSSEQTVQVANQAGERLASVTQRIGEIDGMNQSVATATEEQT 593

Query: 473 SVGEEISQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQF 520
           +V E ++  I  I   + + V +   + R+   +A  A  + +LV  F
Sbjct: 594 AVVESLNLDITQINALNQQGVENLNETLRHCDQLAQQAGRLKQLVGSF 641