Pairwise Alignments

Query, 441 a.a., ATPase related to the helicase subunit of the Holliday junction resolvase from Pseudomonas stutzeri RCH2

Subject, 447 a.a., replication-associated recombination protein RarA from Escherichia coli ECOR38

 Score =  518 bits (1334), Expect = e-151
 Identities = 261/433 (60%), Positives = 328/433 (75%), Gaps = 6/433 (1%)

Query: 11  QPLAARLRAASLDEYVGQEHLLARGKPLREALEQGALHSMVFWGPPGVGKTTLARLLAKV 70
           QPLAAR+R  +L +Y+GQ+HLLA GKPL  A+E G LHSM+ WGPPG GKTTLA ++A+ 
Sbjct: 14  QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73

Query: 71  SDAHFETVSAVLAGVKEIRQAVEIAKQQAAQYGRRTILFVDEVHRFNKSQQDAFLPYVED 130
           ++A  E +SAV +GVKEIR+A+E A+Q     GRRTILFVDEVHRFNKSQQDAFLP++ED
Sbjct: 74  ANADVERISAVTSGVKEIREAIERARQNR-NAGRRTILFVDEVHRFNKSQQDAFLPHIED 132

Query: 131 GTLIFIGATTENPSFELNNALLSRARVYVLKSLDEAALRKLVARALSEP-KGLGDLQLEL 189
           GT+ FIGATTENPSFELN+ALLSRARVY+LKSL    + +++ +A+ +  +G G   + L
Sbjct: 133 GTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDKTRGYGGQDIVL 192

Query: 190 PEESFQMLLAAADGDGRRLLNLLENASDLAEQGGT----ISTDLLQDLLGDSRRRFDKGG 245
           P+E+ + +    +GD RR LN LE  +D+AE   +    +  +LL ++ G+   RFD  G
Sbjct: 193 PDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKG 252

Query: 246 EAFYDQISALHKSVRGSNPDAALYWFARMLDGGCDPLYLARRVVRMASEEIGNADPRALP 305
           + FYD ISALHKSVRGS PDAALYW+AR++  G DPLY+ARR + +ASE++GNADPRA+ 
Sbjct: 253 DRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQ 312

Query: 306 LCLNAWDVQERLGSPEGELAVAQAIVYLACAPKSNAVYTAFKAAMRDAAENGSQEVPLHL 365
           + + AWD   R+G  EGE A+AQAIVYLACAPKSNAVYTAFKAA+ DA E    +VP+HL
Sbjct: 313 VAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHL 372

Query: 366 RNAPTKLMKELGYGNEYRYAHDEPDAYAAGEDYFPEAMEPRRYYHPAPRGLESKIRDKLE 425
           RNAPTKLMKE+GYG EYRYAHDE +AYAAGE YFP  +   RYY P  RGLE KI +KL 
Sbjct: 373 RNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLA 432

Query: 426 HLARLDRESPIQR 438
            LA  D+ SPI+R
Sbjct: 433 WLAEQDQNSPIKR 445