Pairwise Alignments

Query, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 639 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  249 bits (635), Expect = 3e-70
 Identities = 149/347 (42%), Positives = 208/347 (59%), Gaps = 5/347 (1%)

Query: 181 ATAAAAALGAGGLAYLALA-----PLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAM 235
           A A   AL  G LA + +      PLQ       ++    + Q +   RRDE G +   +
Sbjct: 291 AIATLLALLVGVLAAVLITRQITRPLQDTLVAVEKIASGDLTQHMRVTRRDELGVLQQGI 350

Query: 236 KMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASV 295
             + T    ++  I D   Q++  A EL    + ++  A+ Q+ ETDQVATA+++MAA+V
Sbjct: 351 ARMGTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGANSQKVETDQVATAMHEMAATV 410

Query: 296 QEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDIT 355
           QEVA NA++ + AA+ AD E   G  VV      I +LA+D+ ++ + ++ L+  S  I 
Sbjct: 411 QEVARNAEQASHAATGADDEARAGDRVVGEAIGQIERLAEDMHRSTEAMNLLQQESQKIG 470

Query: 356 KVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIG 415
            V+DVI+ +AEQTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ+ST+EI  +I 
Sbjct: 471 SVMDVIKSVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEELIA 530

Query: 416 ALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSA 475
           +LQ G +Q    MQ SR     SVE A +A  SL  I S V+ I  M+QQIAAA EQQSA
Sbjct: 531 SLQHGTQQVANAMQGSRALTDSSVELARKAGSSLESITSTVSSIQSMNQQIAAAAEQQSA 590

Query: 476 VSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522
           V+E I+++I+++R  S+   A    +  S+  +A L   ++ LV QF
Sbjct: 591 VAEEISRSILNVRDVSEQTAAASDETAASSVELARLGGQLQTLVSQF 637