Pairwise Alignments

Query, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

 Score =  371 bits (952), Expect = e-107
 Identities = 224/528 (42%), Positives = 301/528 (57%), Gaps = 15/528 (2%)

Query: 1   MRMNLPVTGRDVSFSETANILSTTDLNGDITYVNPDFIKISGFEESELIGQHHNIVRHPD 60
           MRMNLPVT  + +F     ++STTDL+  ITY N  F+ ISGF   EL+GQ HN+VRHPD
Sbjct: 1   MRMNLPVTEHERTFPGDQRLISTTDLDSRITYCNDAFVAISGFTYDELVGQPHNLVRHPD 60

Query: 61  MPTEAFADLWGSVRGGRSWMGMVKNRCKNGDHYWVSAFVTPISRNGRVMEYQSVRTKPQP 120
           MP   F  +W +++ G+ WMG+VKNR KNGD+YWVSA+VT I   GR+  Y+SVR+ P  
Sbjct: 61  MPPAVFGHMWETIKQGKPWMGIVKNRAKNGDYYWVSAYVTAIYEQGRISGYESVRSVPTR 120

Query: 121 AQIAAAERLYAQLRDKRTPVALRRKPLSARSRVALFAALGAAPCVVAGGLLGGAGVAIAL 180
            QI  AE LYA+LRD R+PV     P +AR    L   LG    ++  GLL  AG     
Sbjct: 121 EQIRRAEALYARLRDGRSPV-----PWAAR----LGHGLGHGWPLIGAGLLSAAGYLWLP 171

Query: 181 ATAAAAALGAGGLAYLALAPLQQLAEQARQVGDNPVG------QLIYAGRRDEYGQIAFA 234
             AA A L A  L        +Q     R + ++P         L Y+      GQ+  A
Sbjct: 172 PYAALAVLMASLLLAWYWVEHRQNQAIRRTLAEHPKAFTSPLVALTYSDNPGLKGQLDLA 231

Query: 235 MKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAAS 294
           +   E      + R+ DA   +   A +     D+  Q   RQ+SETDQ ATAI QMAA+
Sbjct: 232 IISEEARLQTALTRLVDAGVGVKSRAAQSSDLSDAQAQMLDRQRSETDQSATAIAQMAAT 291

Query: 295 VQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDI 354
           +Q+V +N Q TA AAS AD     G+E+  ++   +G ++  +   G  ++ L   +  I
Sbjct: 292 IQQVTHNVQSTAHAASDADQLAQQGSELALKSLKDMGSMSDAVNDIGQAVNALAEQTQSI 351

Query: 355 TKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMI 414
             V+DVI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RT+ ST+EI+ +I
Sbjct: 352 GSVVDVITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTRASTEEIHHII 411

Query: 415 GALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQS 474
            +L+ GA +AV    R  + +  SV        +L GI   V+ I+ MSQQ+A A EQQS
Sbjct: 412 ASLRAGAERAVSTASRGEQISRDSVHSVEAVQAALSGIAVAVSRITGMSQQMATASEQQS 471

Query: 475 AVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522
            V+E+INQ IV I    D       +  + +  +  +A  +  L ++F
Sbjct: 472 HVAEDINQQIVRIAQLCDQSAGQARQGAEISQDLERMAEYLHSLAERF 519



 Score = 31.6 bits (70), Expect = 8e-05
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%)

Query: 201 LQQLAEQARQVGDNPVGQLIYAGRRDE-YGQIAFAMKMLETEAGAMVGRIGDASRQLSQH 259
           +  +AEQ   +  N   +   AG +   +  +A  ++ L     A    I      L   
Sbjct: 358 ITSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTRASTEEIHHIIASLRAG 417

Query: 260 AHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATG 319
           A   +       Q +       + V  A++ +A +V  +   +Q+ A  AS   S  A  
Sbjct: 418 AERAVSTASRGEQISRDSVHSVEAVQAALSGIAVAVSRITGMSQQMA-TASEQQSHVA-- 474

Query: 320 TEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTN 369
            E +N+    I QL    Q AG      E  S D+ ++ + +  +AE+ N
Sbjct: 475 -EDINQQIVRIAQLCD--QSAGQARQGAEI-SQDLERMAEYLHSLAERFN 520