Pairwise Alignments

Query, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 643 a.a., Methyl-accepting chemotaxis protein PctB from Pseudomonas putida KT2440

 Score =  224 bits (570), Expect = 1e-62
 Identities = 133/349 (38%), Positives = 207/349 (59%), Gaps = 3/349 (0%)

Query: 176 VAIALATAAAAALGAGGLAYLALAPLQQLAEQARQV--GDNPVGQLIYAGRRDEYGQIAF 233
           +A+ +A AA A L  G L  + ++PL  +    R +  G+  + + +    +DE+G++A 
Sbjct: 294 IAMLIAVAAIAGL-LGLLIPVLMSPLTTMGRAMRDIAEGEGDLTRRLAVQNKDEFGELAT 352

Query: 234 AMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAA 293
           +         A +  +  A+R +   + +++ A ++S   +  Q   T+ VA AIN++ A
Sbjct: 353 SFNRFVERIHASISEVSSATRLVHDLSEKVVSASNASIIGSEEQSMRTNSVAAAINELGA 412

Query: 294 SVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSND 353
           + QE+A NA   ++ AS A  +   G EVV    +A+  L+Q I ++   I  L A +++
Sbjct: 413 ATQEIARNAADASQHASGASEQAHGGREVVEEAISAMTALSQRISESCAQIETLNASTDE 472

Query: 354 ITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGM 413
           I K+LDVI+GI++QTNLLALNAAIEAARAGE GRGFAVVADEVRNLA RTQ+S +EI+ M
Sbjct: 473 IGKILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHRM 532

Query: 414 IGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQ 473
           I +LQ G+R+AV  M  S+  + Q+V+ A QA   L  +  R+ EI  M+Q +A A E+Q
Sbjct: 533 ITSLQVGSREAVHTMNTSQVSSEQTVQVANQAGERLASVTQRIGEIDGMNQSVATATEEQ 592

Query: 474 SAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAELANSMEVLVQQF 522
           +AV E++N +I  I   +   V N   + +    +A+ A  ++ LV  F
Sbjct: 593 TAVVESLNLDITQINALNQQGVENLNETLRHCDQLAQQAGRLKQLVGSF 641