Pairwise Alignments

Query, 230 a.a., pseudaminic acid CMP-transferase from Pseudomonas stutzeri RCH2

Subject, 253 a.a., 3-deoxy-D-manno-octulosonate cytidylyltransferase from Pseudomonas sp. S08-1

 Score = 52.4 bits (124), Expect = 8e-12
 Identities = 60/205 (29%), Positives = 83/205 (40%), Gaps = 30/205 (14%)

Query: 5   IIPARGGSKRIPRKNIKPFCGKPMIAWSIEAALQSGCFDRVVVSTDDAEIADVALQHGAD 64
           +IPAR  S R+P K ++   GKPM+    E A +S    RVVV+TDDA I +     GA+
Sbjct: 7   VIPARYASSRLPGKPLQDIAGKPMVQHVWEQAKKSSA-TRVVVATDDARILEACQGFGAE 65

Query: 65  VPFTRPAELSDDRTGTVPVIRHAIEWFSQAGLAVEQVCC-LYATAPFVTAEDLDRGMQVL 123
           V  TR     D  +GT        E  +Q GLA + +   +    P +    +D+    L
Sbjct: 66  VLMTR----VDHNSGT----DRLAEVATQLGLANDAIVVNVQGDEPLIPPSIIDQVAANL 117

Query: 124 QGNDCDYAFSVTSYAFPIQRAIRINAQGRVEMFNPEYFN--TRSQDLEEAFHDAGQFYWG 181
             N       + + A PI+            +FNP      T    L   F  A      
Sbjct: 118 AANS---QAGIATLAEPIEDV--------TALFNPNVVKVVTDKSGLALTFSRAPL---- 162

Query: 182 RADAWLQGKQIFSPDALPVLLPRHR 206
              AW +     S DALP  +P  R
Sbjct: 163 ---AWARDAFAKSRDALPEGVPYRR 184