Pairwise Alignments

Query, 241 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

Subject, 246 a.a., RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons from Pseudomonas putida KT2440

 Score =  394 bits (1013), Expect = e-115
 Identities = 200/238 (84%), Positives = 219/238 (92%), Gaps = 1/238 (0%)

Query: 3   YSKAQAKDAQYRLIDQYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEAAKKYDAGK 62
           YS+A AKDAQY LI++YAPLVKRIAYHLLARLPA+VQV+DLIQAGMIGLLE A KYDA K
Sbjct: 9   YSRA-AKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASK 67

Query: 63  GASFETYAGIRIRGTMLDEVRKGDWAPRSVHRNSRMVSEAIRTIEAKTGRDAKDHEVAAE 122
           GASFETYAGIRIRG MLDEVRKGDWAPRSVHRN+RMVS+A+R +EA+TGRDAKDHEVAAE
Sbjct: 68  GASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAE 127

Query: 123 LKLSLDEYYGILGDTLGSRLFSFDDLLQEGEHGELQEDAASLHPEPFRDLEDERFQQALV 182
           L+LSLD+YYGIL DTLGSRLFSFDDLLQ+GEH  L ED AS   EP R LE+ERFQ AL 
Sbjct: 128 LQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEEERFQAALT 187

Query: 183 DAIANLPEREKLVLSLYYDEELNLKEIGQVLGVSESRVSQLHSQCAARLRARLGEWRA 240
           +AIANLPERE+LVL+LYYDEELNLKEIG+VLGVSESRVSQLHSQCAARLR+RLGEWRA
Sbjct: 188 EAIANLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRA 245