Pairwise Alignments

Query, 241 a.a., RNA polymerase sigma factor, FliA/WhiG family from Pseudomonas stutzeri RCH2

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola ME23

 Score = 61.2 bits (147), Expect = 5e-14
 Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 17/242 (7%)

Query: 1   MYYSKAQAKDAQYRLIDQYAPLVKRIAYHLLARLPASVQVDDLIQAGMIGLLEAAKKYDA 60
           M   +A+A+ A+  +++    LV  IA     R    +Q  DLIQ G IGL++A  K++ 
Sbjct: 363 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNR---GLQFLDLIQEGNIGLMKAVDKFEY 419

Query: 61  GKGASFETYAGIRIRGTMLDEVRKGDWA-----PRSVHRNSRMVSEAIRTIEAKTGRDAK 115
            +G  F TYA   IR  +   +   D A     P  +      ++   R +  + GR+  
Sbjct: 420 RRGYKFSTYATWWIRQAITRSI--ADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT 477

Query: 116 DHEVAAELKLSLDEYYGILGDTLGSRLFSFDDLLQEGEHGELQEDAASLHPE-PFRDLED 174
             E+A  + +  D+   +L   +     S +  + + E   L +       E P      
Sbjct: 478 PEELAERMLMPEDKIRKVL--KIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATS 535

Query: 175 ERFQQALVDAIANLPEREKLVLSLYYDEELN----LKEIGQVLGVSESRVSQLHSQCAAR 230
           E  + A  D +A L  RE  VL + +  ++N    L+E+G+   V+  R+ Q+ ++   +
Sbjct: 536 ESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 595

Query: 231 LR 232
           LR
Sbjct: 596 LR 597