Pairwise Alignments

Query, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC102

 Score = 1278 bits (3306), Expect = 0.0
 Identities = 647/1140 (56%), Positives = 848/1140 (74%), Gaps = 7/1140 (0%)

Query: 9    LPAASGKQHW-GNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPV 67
            LP  +G+Q   G L GAA +  +AE A       +L+  D Q+A RL +E++ F   + V
Sbjct: 25   LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-V 83

Query: 68   LHFPDWETLPYDIFSPHQDIVSQRISALYQLPELSHGVLVVPITTALHRLAPKRFLLGSS 127
            ++  DWETLPYD FSPHQDI+S R+S LYQLP +  GVL+VP+ T + R+ P  FL G +
Sbjct: 84   MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 143

Query: 128  LVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPLPYRIDLFDD 187
            LV++ GQ+L  + +R +L++AGYR VD V EHGE+A RGAL+DLFPMGS LPYR+D FDD
Sbjct: 144  LVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 203

Query: 188  EIETLRTFDPENQRSIDKVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCPIYQD 247
            EI++LR FD ++QR++++VE+I LLPA EFP  K A+  FR+++R+ F+V      IYQ 
Sbjct: 204  EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 263

Query: 248  LSTGITPAGIEYYLPLFYEETAT-LFDYLPEDSQVFSLPGIEQAAEQFWSDVRNRYEERR 306
            +S G  PAGIEY+ PLF+ E    LF Y P ++ + +   +E +AE+F +D   R+E R 
Sbjct: 264  VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTLARFENRG 323

Query: 307  VDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVESGIGRERFNAQALPELAIESKA 366
            VDP RPLLPP  L++ V++ F+ LK WPRV    + + +         Q LP+LA++++ 
Sbjct: 324  VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 383

Query: 367  SEPLGKLRQFLESYPGRVLFTAESAGRREVLLELLARLKLRPQEVDGWTDFLASDQRLAI 426
              PL  LR+FLES+ G V+F+ ES GRRE L ELLAR+K+ PQ +    +  ASD+   +
Sbjct: 384  KAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYL 441

Query: 427  TIAPLDEGL--QLDDVALVAESPLFGQRVMQRRRREKSRDGGENVIKNLTELREGSPVVH 484
             I   + G    + ++AL+ ES L G+RV +RR+  +     + +I+NL EL  G PVVH
Sbjct: 442  MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 501

Query: 485  IDHGVGRYQGLTTLEIEGQAQEFLLLQYAEEAKLYVPVASLHLIARYTGSDDALAPLHRL 544
            ++HGVGRY G+TTLE  G   E+L+L YA +AKLYVPV+SLHLI+RY G  +  APLH+L
Sbjct: 502  LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 561

Query: 545  GSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPQVDYETFAAGFPFEETPDQ 604
            G + W +A++KAAE+VRDVAAELLDIYA+RAA+EG+AFK  +  Y+ F   FPFE TPDQ
Sbjct: 562  GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 621

Query: 605  QAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVGVLVPTTLLAQQH 664
              AI+AV  D+     MDRLVCGDVGFGKTEVAMRAAF+AV   +QV VLVPTTLLAQQH
Sbjct: 622  AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 681

Query: 665  YNSFRDRFADWPVRVEVMSRFKSAKEVQNAIAELAEGKIDILIGTHKLLQDDVKFSNLGL 724
            Y++FRDRFA+WPVR+E++SRF+SAKE    +AE+AEGKIDILIGTHKLLQ DVKF +LGL
Sbjct: 682  YDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 741

Query: 725  VIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRLS 784
            +I+DEEHRFGVR KE++KA+R+ VDILTLTATPIPRTLNM+++GMRDLSIIATPPARRL+
Sbjct: 742  LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 801

Query: 785  VRTFVMEQQNTVIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQM 844
            V+TFV E  + V++EA+LRE+LRGGQVYYL+NDV+ I+K A  L  LVPEAR+AIGHGQM
Sbjct: 802  VKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 861

Query: 845  RERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVGR 904
            RER+LE+VM+DF+H+RFNVLV +TIIETGID+P+ANTIIIERAD FGLAQLHQLRGRVGR
Sbjct: 862  RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 921

Query: 905  SHHQAYAYLLTPTRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQSG 964
            SHHQAYA+LLTP  KAMT DAQKRLEAIA+ +DLGAGF LATHDLEIRGAGELLGE QSG
Sbjct: 922  SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 981

Query: 965  QIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLI 1024
             ++ +GF+LYME+LE AV A++ G +P+LE       E+ LR+P+L+P+D++PDV+ RL 
Sbjct: 982  SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1041

Query: 1025 LYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQGG 1084
             YKRIA+A  E+ L+E++VE+IDRFGLLP+P + L+ +  L+ QA+KLGI K++   +GG
Sbjct: 1042 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG 1101

Query: 1085 RIEFSADTSVDPMVLIKLIQSQPKRYKFEGATLFKFQVPMERPEERFNTLEALLERLAPN 1144
             IEF+    V+P  LI L+Q QP+ Y+ +G T  KF   +   + R   +   +  L  N
Sbjct: 1102 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1161