Pairwise Alignments

Query, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 453 a.a., ATP-dependent RNA helicase RhlE from Escherichia coli ECOR38

 Score =  286 bits (731), Expect = 1e-81
 Identities = 165/435 (37%), Positives = 254/435 (58%), Gaps = 19/435 (4%)

Query: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61
           FD   L   +L+AVAE  + EPTP+Q  AIP  LEGRDL  +AQTG+GKTA F LP+L  
Sbjct: 3   FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62

Query: 62  LIG---DAVVRTDVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAVL 118
           LI     A  R  VRALIL PTRELA Q  + V  +S++  I+S ++ GG     Q   L
Sbjct: 63  LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122

Query: 119 RKVPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQQ 178
           R   D+L+ TPGR+++  +   + L  VE+L+LDEADRMLDMGF  D++R++ +   ++Q
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQ 182

Query: 179 TLLFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWLL 238
            LLFSAT     ++ +   +L +PL +++ R +  S+   Q +   +    +E L H ++
Sbjct: 183 NLLFSATFSDD-IKNLAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH-MI 240

Query: 239 ANETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVLV 298
               +++ ++FT T+  A+ L  +L  +G+++  +HG+K Q  R  A+   K G ++VLV
Sbjct: 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 299 ATDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSSI 358
           ATD+AARGLDIE L  V+N+++P   ++YVHRIGRTGRA A G A+SL+C ++  L+  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ERYLKQRFEHRVVKGLKGS-------YMGPKNLKASGKAAG-------PKKKKDDKKKDD 404
           E+ LK+      + G +             +  +  G+  G       P++ +   K  +
Sbjct: 361 EKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGRGQGGGRGQQQPRRAESGVKSGN 420

Query: 405 KKKAKPTAKRPKNAK 419
            K A+  ++R  +AK
Sbjct: 421 AKPAEKPSRRLGDAK 435