Pairwise Alignments

Query, 255 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 13/247 (5%)

Query: 7   AMLLALALPV-GYSHAEQVRFVTED-FPPFTFAATTAPIDTPAGPFVDVIGAVCAQLRID 64
           A+L A AL + G + AE +RF TE  +PPF +      +    G  VD+  A+C Q++++
Sbjct: 6   ALLGACALLLAGAASAETLRFATEGAYPPFNYVDADNKLH---GFDVDITHALCEQMKVE 62

Query: 65  CPIQLLPWRRALALAEGGEVDGIF-TVIRSPERERAFHLTRMLVTSRYGVYARSASRFVF 123
           C +    W   +      + D I  ++I + ER +    T     +   V     S+ + 
Sbjct: 63  CTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSK-ID 121

Query: 124 HRPEDLAGRTVAVYGPSGTSFVLGQHLTKVADVELILESDNRRLMRMLQAGRFGEQGVAV 183
               D  G TV     S T  +  + +   A  ++ L          L AGR       V
Sbjct: 122 SAQTDFVGYTVGAQS-SSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLD----GV 176

Query: 184 VNQDVAWHLIEQERLADIHE-AGELQAVSYAIGLSRAAVSEAEFKRFNQALESLIADGTV 242
           +      H    +   D  +  G++        ++     EA  +R N AL+ ++A+GT 
Sbjct: 177 IADKFPLHEWMNKNGGDCCKILGDVADTKADAAIAVRKDDEALRQRLNTALQQIVANGTY 236

Query: 243 SRILRRY 249
            +I  +Y
Sbjct: 237 QKIASKY 243