Pairwise Alignments

Query, 368 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 351 a.a., Nucleoside ABC transporter, permease protein 1 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  342 bits (877), Expect = 9e-99
 Identities = 172/346 (49%), Positives = 234/346 (67%)

Query: 2   LLSLQPRGEASRAMLWFSPLLAALLTLLSGALLFALLGHPPLETLKVLLIDPLGDLYGVS 61
           +L L+ R + S    + SPLLA L+T++ G +LFA+LG  P+  L+V   +P+   Y +S
Sbjct: 1   MLRLEVRPQPSARWGYASPLLALLITVVIGVILFAVLGKDPVRGLQVFFWEPIKSTYALS 60

Query: 62  ELLVKALPILLCALGLAVVYNARIWNIGAEGQLLIGALAGSALAVNIIDWDSRWALVLTL 121
           EL+VKA P+L+ ALGLAV + + +WNIGAEGQ +IGA+  + +A+        W +   L
Sbjct: 61  ELMVKATPLLIIALGLAVCFRSNVWNIGAEGQYIIGAIFAAGVALTADKTTGAWIVPAVL 120

Query: 122 LLGTLGGAAWAGLCAWLKTAFNANEILTSIMLNYIALNLLLFAVHGPLKDPEGFNFPESA 181
             G LGG  WAG+ A L+  FNANEIL S+ML Y+A+ +L F V+GP KDP G+NFP++ 
Sbjct: 121 AAGVLGGMLWAGITALLRDRFNANEILVSLMLVYVAVQVLNFLVYGPWKDPMGYNFPQTK 180

Query: 182 MFGDATRLPELIEGLRVHGGFYFALLALVVVWVLLQKSFLGFQIKVLGLDKRAAGFVGFR 241
            F   T++P L+ G RV  G   AL  +  VWV L +++ G+   V GL   AA + GF 
Sbjct: 181 TFESVTQIPRLMSGSRVTIGLLIALAGVAAVWVFLFRTYSGYAQLVGGLAPAAARYAGFS 240

Query: 242 DKKLVWIALLISGGLAGLAGVAEVTGPIGQLVPQVSPGYGYAAITVAFLGRLNPIGIVFA 301
            +K +W+ALL SGG AGLAG  EV GPIGQL P V  GYG+AAI VAF+GRL+P+GIVF+
Sbjct: 241 SRKALWVALLTSGGAAGLAGALEVAGPIGQLTPYVPAGYGFAAIIVAFVGRLHPVGIVFS 300

Query: 302 SLLMALLYLGGENAQMAANLPQSITQLFQGMVLFFLLACDVLILYR 347
           ++LM++ Y+GGE AQ    LP+SIT +FQG++LF LLACD LI YR
Sbjct: 301 AILMSMFYIGGELAQSRLGLPKSITGVFQGLLLFALLACDTLIAYR 346