Pairwise Alignments

Query, 408 a.a., Arabinose efflux permease from Pseudomonas stutzeri RCH2

Subject, 393 a.a., chloramphenicol resistance protein from Agrobacterium fabrum C58

 Score =  249 bits (635), Expect = 1e-70
 Identities = 139/378 (36%), Positives = 218/378 (57%), Gaps = 6/378 (1%)

Query: 23  ALAMGGFAIGTGEFAIMGLMPDVAEGLGISEPQVGNVISTYALGVVVGAPLLAILGSRLF 82
           AL +  +AIGT EF I+GL+P VA  L I+ P  G ++S YALGV  GAP+L  L  R+ 
Sbjct: 7   ALTIAAYAIGTTEFVIVGLLPTVANDLHITLPLAGLIVSVYALGVTFGAPILTALTGRIE 66

Query: 83  RRHLLLLLMGFFALGNFASALAPDYSTLMIFRFITGLPHGAYFGVAMLVAASMVPPDKRA 142
           R+ LLL LM  F +GN A+AL+P Y  L++ R I    HG +F V   +AA +VP ++RA
Sbjct: 67  RKPLLLGLMALFIVGNTAAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLVPENRRA 126

Query: 143 QAVARVLMGLTVAILIGNPLATWLGQWASWRYAFALVGAIALLTVLLVALFLPLN-RDEP 201
            A+A + MGLTVAI+ G P+ T++GQ   WR  F  VGA+ ++  + +A+ LP   +  P
Sbjct: 127 SAIAMMFMGLTVAIVTGVPIGTYIGQIFGWRATFWAVGALGIVAFVAIAVLLPNTLKKAP 186

Query: 202 RNSPLLEIRAFNRPQVWLALAISSIGFAGMFCVFSYMAPTLLNVTGVSAGWIPFALAAFG 261
             S   ++R     ++ +  A++++G+ G F  F+++AP L +VTG S   +   L  +G
Sbjct: 187 PASIFDQVRVLGSGRLLIVFAMTALGYGGTFVAFTFLAPILQDVTGFSESSVSLILVLYG 246

Query: 262 LGGIVGNLVGGWLFDRLRFKAVAWLLLWSALVLLVFPLAAHSVWTIFPAVFAVGTMVSLS 321
           +    GN+ GG + +    KA+  L    A+VL++F   A S       + A+G +   +
Sbjct: 247 IAIAAGNIGGGKIANHNPVKALIGLFALQAIVLVIFSFTAVSPVLTLITLVALGFLSFAN 306

Query: 322 -PALQTHLMDVAAD----AQTLAAASNHAAFNVANALGPWLGGLAITAGFGWTSTGYIGA 376
            P LQ +++ +A +    A  +A+A N AAFN+  ALG WLGG+ + +  G  +T ++GA
Sbjct: 307 VPGLQLYVVQLAKEHRPGAVDVASALNIAAFNLGIALGAWLGGVVVESPMGLGATPWVGA 366

Query: 377 ATAVGGLLVFAWAWKIER 394
                 LL+  W+  ++R
Sbjct: 367 ILVAVALLLTIWSGALDR 384