Pairwise Alignments

Query, 279 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 268 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

 Score =  106 bits (264), Expect = 6e-28
 Identities = 74/254 (29%), Positives = 110/254 (43%), Gaps = 8/254 (3%)

Query: 22  ARAVADGRKVCYAPHCHETFSIGAITAGASTYFNGDAQERIARGTLVLINPQTVHACNPI 81
           A  VAD  +  +  H H+ F IG I  GA    +G        G ++ +NP  VH   P+
Sbjct: 17  AAVVADSDR-SFPRHMHDQFGIGLIARGAQKSLSGRGMVEAGAGHVITVNPGEVHDGIPL 75

Query: 82  D--GRPWSYLMFYVDARWLGALQHELGVSSDGHFIPYAPIQSLDQALFNGLTQLYATLRD 139
              GR W   M Y+D   +     ++     G F    P+ +   A          T ++
Sbjct: 76  GEGGRAWR--MLYLDIEIVRDAIADISEKDRGTFEFAYPVDTRPLAKRFNAVFSAVTAKE 133

Query: 140 PQADTLRKQSAAVEYFTLLQQTLAPAPTQPHAEPLQQLSRAADYIAEHCTEALRLEDICQ 199
              +TL      + +     +T A  P     + ++   RA   I +      RL D+ +
Sbjct: 134 RPGETLDSDETLLMFLADAMETAANPPVVAAPDTIK---RAKSSIDDDPARPFRLADLAK 190

Query: 200 AAELSPSYLIRTFKQHYGMTPHAYLLNRRIQRSQHWLRQGLDLAEIALAAGFADQAHFQR 259
            A +S    +R F +  G+TPH+YLL RR+  ++H L  G   AE A+ AGF DQ+H  R
Sbjct: 191 EAGMSQFRFLRAFAKATGLTPHSYLLQRRVHLARHALADGTRPAEAAVIAGFVDQSHLNR 250

Query: 260 TFKRQLAATPGQYR 273
            F RQ   TP  YR
Sbjct: 251 FFVRQFGVTPAVYR 264