Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1292 a.a., macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  985 bits (2546), Expect = 0.0
 Identities = 591/1358 (43%), Positives = 806/1358 (59%), Gaps = 140/1358 (10%)

Query: 66   IRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHG------- 118
            I + +SLP++A+R EI+AA+  HQV+++ GETGSGKTTQLPKI L +GRG          
Sbjct: 8    IEFPESLPVSARRHEIEAAMRDHQVVIVCGETGSGKTTQLPKIALAMGRGKCNAKPGQRG 67

Query: 119  -LIGHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAET 177
             LIGHTQPRR+AA SVA R+AEE+ TPLGE+VGY+VRF+D+    + +KLMTDGILLAET
Sbjct: 68   QLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLSKDASVKLMTDGILLAET 127

Query: 178  QHDRFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFD 237
            Q D  L  YDTII+DEAHERSLNIDFLLG+L+ LLPRRPDLKV++TSATID  RF+ +F 
Sbjct: 128  QTDPDLRAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKVVVTSATIDADRFARYFA 187

Query: 238  GA----PIVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSV 293
             A    P++ VSGRT+PVE  +RP     D D N    D         A+DE+       
Sbjct: 188  SAKGPAPVLMVSGRTFPVEVRWRPYEESRDYDLNNAIAD---------AVDELWR----- 233

Query: 294  GKRPGDVLVFLPGEREIRDAAEVLRK-----ANLKFTEVLPLYARLTPAEQQKIFQPRPG 348
            G   GD+LVFLPGEREIR+AA+ LRK       L+  EVLPL+ARL+ AEQ +IFQ   G
Sbjct: 234  GPAGGDILVFLPGEREIREAADHLRKHLSHQPVLRSAEVLPLFARLSQAEQDRIFQDHSG 293

Query: 349  RKIVLATNVAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCG 408
            R+IVL+TNVAETSLTVPGIR+VID+GTAR+ RYS+R KV++L +E +SQA+ANQR GRCG
Sbjct: 294  RRIVLSTNVAETSLTVPGIRFVIDAGTARVKRYSFRQKVEQLLVEPISQAAANQRAGRCG 353

Query: 409  RVEPGICIRLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKA 468
            RV  GI IRLY E  F  RP FTDPEILR++LA VIL+M  LRLG ++DF FIE P  +A
Sbjct: 354  RVADGIAIRLYEEAGFGARPAFTDPEILRSSLAGVILRMKALRLGAVEDFAFIEAPQKRA 413

Query: 469  ISDGFNLLQELSAVNRENQLTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALS 528
            I DG+ LL EL+AV+  N+LTP+G+ L+RLP+DPR+GRM+LEA Q+G+L EVL++ASALS
Sbjct: 414  IVDGYQLLAELNAVDEANELTPIGQTLSRLPLDPRVGRMILEAQQRGALDEVLVIASALS 473

Query: 529  VQDVRERPADRQQAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFL 588
            VQDVR+RP D+Q  ADQA A++ D  S+F+  + LW+  E+ +   G             
Sbjct: 474  VQDVRDRPLDKQAQADQAQAKFDDEKSEFSGTLKLWKWLEDTKGGHG------------- 520

Query: 589  NYLRLREWRDAHRQLTLIARELKLGSGRSADGSGQAAHADKARRVEDG-EASSALSAGVS 647
                 ++ + +HRQ   + RE  +                  RRV +  +  S L   V+
Sbjct: 521  -----KDHKLSHRQYESVLRENFIN----------------VRRVREWRDIHSQLHTVVA 559

Query: 648  TQPAPTKDTKVNVILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNKTEEGD-FLGAR 706
                   D                  K  SY  +H A+LAGLL  +G K E  D +LGAR
Sbjct: 560  EHQWRLND------------------KPASYEQLHLAMLAGLLGNVGQKHETEDLYLGAR 601

Query: 707  QRRFWVHPSSVIGRKKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPH 766
              +F+ HP + + ++   W++ AELVETT+LF R +A IEP W+E + GHLIKK   +PH
Sbjct: 602  GIKFYRHPGANLSKRPGRWIVCAELVETTRLFGRGIAGIEPLWLEQVGGHLIKKQLLDPH 661

Query: 767  WEKKRGQVVAYEQVTLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSA 826
            WEKK  QV A E+ TLYG++V   R   YG +DP  ARE+FIRE LV GE  +R   L+A
Sbjct: 662  WEKKAAQVTALERATLYGLVVYSNRRTDYGRVDPVGAREIFIREALVAGEWETRLPFLAA 721

Query: 827  NRELLERLDELEAKARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLL 886
            N++L+ ++ ELE K+RR+D+L D+E ++ +YD +LPA+I   A+ E WY+    +NP+LL
Sbjct: 722  NQKLVRQVAELEHKSRRQDVLVDDELIYAFYDQQLPANICNGAAMERWYRDAVRENPKLL 781

Query: 887  IMREEDVLAREASEVTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRS 946
            ++  E+++  EA+ +T   +P  LR+G +     Y  EP  PRDG+++ +P   L Q   
Sbjct: 782  LLTREELMRHEAAGITTQTFPKALRLGGVDCACSYLHEPGDPRDGLSVTLPIFALNQASE 841

Query: 947  ERLDWLVPGLLETKAVALVRNLPKALRKNFVPVP----DFVGAALARIAFGEGSLPEALG 1002
            +R DWLVPG+L+ K +AL++ L +  R   VP+P     F  A     AFG G+L +A+ 
Sbjct: 842  DRCDWLVPGMLKEKLLALLKTLHQRPRSRLVPLPATAERFAQALCEPAAFGAGNLMDAVL 901

Query: 1003 RELLRMTGARVS-DDAWAEAAAGLESHLKMNIEVVDARGKFLGEGRDL----AELTARFA 1057
            + +   T   +  +D   +    L +H  M++ VVD  G+ LG+GR+L    AEL A+  
Sbjct: 902  KLVREATQLDIQRNDIKVDM---LSAHHFMHLRVVDEHGRQLGQGRNLAALKAELGAQAR 958

Query: 1058 EASQA----------ALAPP--QQKAEQKPVEAKG------------------FAQVAEK 1087
             A QA          A APP    K    PV  K                   F ++ E 
Sbjct: 959  GAFQALASLKMEGLRAAAPPAAPAKGSAAPVAVKAAAAKAPAVSAAQRHTAWDFGELPEL 1018

Query: 1088 AQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLAEPAKYLRNK 1147
             + +    ++  +PALV++   V+   F     A+ +HR  L+RL   Q+ +  KYL   
Sbjct: 1019 MEIRQGQQTLIGFPALVDDGEAVRIEVFDEPEVAQARHREGLRRLFALQIRDALKYLEKN 1078

Query: 1148 LPGLTELGLLYRDMGK-------VDALVEDILLASLDSCILDGEAQLPRDGAALASLAER 1200
            LPGL  +G+ Y  +GK       ++ L   IL  +LD   L     LP D AA     E 
Sbjct: 1079 LPGLQAMGVAYMQVGKEAGGGGTLEELRSQILELALDRAFLGD--PLPGDEAAFKRRVEE 1136

Query: 1201 KRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVRE 1260
             RG  T  A  +AR    +L  +    ++ K     A      DI  QL  LV   F+ +
Sbjct: 1137 GRGRLTLIANEIARTAGTVLAEYAAAARKLKDSKPPADVA--TDIAQQLQRLVPKRFLLQ 1194

Query: 1261 TPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRDAE 1320
            TP   L+  PRYLKA++ R +K+ A   RD     EL    +++   + +  ++G +DA 
Sbjct: 1195 TPYAQLQHLPRYLKAVQLRLDKLRADPARDATRLAELRPQDQRFWRLVAE--RKGVQDAR 1252

Query: 1321 LALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQV 1358
            L   RW+LEE RVS +AQ+L T   VS KRL K W+Q+
Sbjct: 1253 LQELRWLLEELRVSFFAQELRTPQPVSLKRLEKAWTQL 1290