Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1300 a.a., ATP-dependent RNA helicase HrpA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1159 bits (2998), Expect = 0.0
 Identities = 634/1369 (46%), Positives = 856/1369 (62%), Gaps = 89/1369 (6%)

Query: 4    ATPAIDTLLKNLDQALFADRHRLRRQLHELRK--QPDEAK-----LAQWLERFQASVAKV 56
            +T  +  L + LD  +  D+ R  R+LH ++K   PD  +     +A+ +E+  A VA  
Sbjct: 5    STLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQAIFQTMAKEIEQAAAQVALR 64

Query: 57   EARRRSVPSIRYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGV 116
            EA R   PSI Y  +LP++ K+ +I  A+  HQV+++AGETGSGKTTQLPKIC+E+GRG+
Sbjct: 65   EAAR---PSITYPQNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGI 121

Query: 117  HGLIGHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAE 176
             GLIGHTQPRRLAAR+VA R+AEE+ T  G  +GY+VRF D    ++++KLMTDGILLAE
Sbjct: 122  KGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRFSDHVSSNTMVKLMTDGILLAE 181

Query: 177  TQHDRFLERYDTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHF 236
             Q DR L +YDT+I+DEAHERSLNIDFLLG+LK LLPRRPDLKVIITSATID +RFS HF
Sbjct: 182  IQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLPRRPDLKVIITSATIDPERFSRHF 241

Query: 237  DGAPIVEVSGRTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKR 296
            + API+EVSGRTYPVE  YRP+  E D+      D L   Q I  A+DE+        + 
Sbjct: 242  NNAPIIEVSGRTYPVEVRYRPIVEEADD---TERDQL---QAIFDAVDELGR------ES 289

Query: 297  PGDVLVFLPGEREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATN 356
            PGD+L+F+ GEREIRD A+ L K NL+ TEVLPLYARL+ +EQ ++FQ   GR+IVLATN
Sbjct: 290  PGDILIFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATN 349

Query: 357  VAETSLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICI 416
            VAETSLTVPGI+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGRV  GICI
Sbjct: 350  VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 409

Query: 417  RLYSEEDFLGRPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLL 476
            RLYSE+DFL RPEFTDPEILRTNLA+VILQM  L LGDI  FPF+E PD + I DG  LL
Sbjct: 410  RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL 469

Query: 477  QELSAVNRENQ-----LTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQD 531
            +EL A+  + Q     LTP+GRQL++LP+DPRL RM+LEA + G + E +I+ SALS+QD
Sbjct: 470  EELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQD 529

Query: 532  VRERPADRQQAADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYL 591
             RERP D+QQA+D+ H ++ D +SDF A +NLW    E+++ L SN  R  CR ++LNYL
Sbjct: 530  PRERPVDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRLCRTDYLNYL 589

Query: 592  RLREWRDAHRQLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPA 651
            R+REW+D + QL  + +EL +                                 V+++PA
Sbjct: 590  RVREWQDIYTQLRQVVKELGI--------------------------------PVNSEPA 617

Query: 652  PTKDTKVNVILRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNK-TEEGDFLGARQRRF 710
                                      Y  +H A+L GLLS IG K  ++ ++ GAR  RF
Sbjct: 618  -------------------------EYREIHVALLTGLLSHIGMKDADKQEYTGARNARF 652

Query: 711  WVHPSSVIGRKKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKK 770
             + P S + +K P W M AELVET++L+ R+ A+IEP+W+EP+A HLIK+++ EPHWE+ 
Sbjct: 653  SIFPGSGLFKKPPKWTMVAELVETSRLWGRIAARIEPEWVEPVAQHLIKRSYSEPHWERA 712

Query: 771  RGQVVAYEQVTLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANREL 830
            +G V+A E+VT+YG+ +V  R V+Y  IDP   RELFIR  LV G+  +R      N +L
Sbjct: 713  QGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKL 772

Query: 831  LERLDELEAKARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMRE 890
               ++ELE K+RRRDIL D++TLF++YD R+  D+     F++W+K+ S + P LL   +
Sbjct: 773  RAEVEELEHKSRRRDILVDDDTLFEFYDQRISHDVISARHFDSWWKKISRETPDLLNFEK 832

Query: 891  EDVLAREASEVTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLD 950
              ++   A +++   YP++   G L+L L Y FEP    DGVT+ +P PLL Q+     +
Sbjct: 833  SMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFE 892

Query: 951  WLVPGLLETKAVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTG 1010
            W +PGL     +AL+++LPK +R+NFVP P++  A L R+   E  L +AL REL RMTG
Sbjct: 893  WQIPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTG 952

Query: 1011 ARVSDDAWAEAAAGLESHLKMNIEVVDARGKFLGEGRDLAEL-TARFAEASQAALAPPQQ 1069
              V  + W      +  HLK+   VV+ + K L EGR LAEL  A   +  +   A    
Sbjct: 953  VTVDREDWHWDQ--VPEHLKITFRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADD 1010

Query: 1070 KAEQKPVEAKGFAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRAL 1129
              EQ  +    F ++ E  + K     +  +PALV+E   V    F    E +      L
Sbjct: 1011 GIEQSGLHIWSFGELPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGL 1070

Query: 1130 QRLLLQQLAEPAKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPR 1189
            +RLLL  +  P KYL  KLP   +LGL +   GKV  L++D +   +D  ++D       
Sbjct: 1071 RRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGVDK-LIDANGGPVW 1129

Query: 1190 DGAALASLAERKRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQL 1249
              A   +L E+ R +       +A+    IL     + KR KG++D++ A+ L+DIKAQ+
Sbjct: 1130 SEAGFTALHEKVRAELNDTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQM 1189

Query: 1250 GNLVYPGFVRETPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLN 1309
              LVY GFV     + L +  RYL+AIE+R EK+     RDR    ++    + +Q  +N
Sbjct: 1190 SGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWIN 1249

Query: 1310 KHLQEGKRDAELALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQV 1358
            K     + D ++   RWM+EE RVS +AQQLGT   +SDKR+ +   Q+
Sbjct: 1250 KLPPARREDDDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQI 1298