Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 1300 a.a., hypothetical protein from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 1159 bits (2999), Expect = 0.0
 Identities = 629/1359 (46%), Positives = 849/1359 (62%), Gaps = 83/1359 (6%)

Query: 11   LLKNLDQALFADRHRLRRQLHELRK--QPD--EAKLAQWLERFQASVAKVEARRRSVPSI 66
            L + LD  +  DR R  R+LH ++K   PD  +A   +  +    +  KV  R  + P I
Sbjct: 12   LQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEI 71

Query: 67   RYDDSLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQPR 126
             Y D+LP++ K+ +I  A+  HQV+++AGETGSGKTTQLPKIC+E+GRG+ GLIGHTQPR
Sbjct: 72   TYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPR 131

Query: 127  RLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHDRFLERY 186
            RLAAR+VA R+AEE+ T  G  +GY+VRF D   D++++KLMTDGILLAE Q DR L +Y
Sbjct: 132  RLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQY 191

Query: 187  DTIIVDEAHERSLNIDFLLGFLKTLLPRRPDLKVIITSATIDLQRFSEHFDGAPIVEVSG 246
            DTII+DEAHERSLNIDFLLG+LK LLPRRPDLK+IITSATID +RFS HF+ API+EVSG
Sbjct: 192  DTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSG 251

Query: 247  RTYPVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDVLVFLPG 306
            RTYPVE  YRP+  E D+      D L   Q I  A+DE++          GD+L+F+ G
Sbjct: 252  RTYPVEVRYRPIVEEADD---TERDQL---QAIFDAVDELSQESH------GDILIFMSG 299

Query: 307  EREIRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPGRKIVLATNVAETSLTVPG 366
            EREIRD A+ L K NL+ TE+LPLYARL+ +EQ ++FQ   GR+IVLATNVAETSLTVPG
Sbjct: 300  EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPG 359

Query: 367  IRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFLG 426
            I+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGRV  GICIRLYSE+DFL 
Sbjct: 360  IKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS 419

Query: 427  RPEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNREN 486
            RPEFTDPEILRTNLA+VILQM  L LGDI  FPF+E PD + I DG  LL+EL A+  + 
Sbjct: 420  RPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDE 479

Query: 487  Q-----LTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQQ 541
            Q     LTP+GRQL++LP+DPRL RM+LEA + G + E +I+ SALS+QD RERP D+QQ
Sbjct: 480  QASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQ 539

Query: 542  AADQAHAQWKDPDSDFAALINLWRGFEEKRQELGSNPLRTWCRKNFLNYLRLREWRDAHR 601
            A+D+ H ++ D +SDF A +NLW    E+++ L SN  R  CR ++LNYLR+REW+D + 
Sbjct: 540  ASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRIDYLNYLRVREWQDIYT 599

Query: 602  QLTLIARELKLGSGRSADGSGQAAHADKARRVEDGEASSALSAGVSTQPAPTKDTKVNVI 661
            QL  + +EL +                                 V+++PA          
Sbjct: 600  QLRQVVKELGI--------------------------------PVNSEPA---------- 617

Query: 662  LRQQAEASEAAQKAKSYASVHKAILAGLLSQIGNK-TEEGDFLGARQRRFWVHPSSVIGR 720
                            Y  +H A+L GLLS IG K  ++ ++ GAR  RF + P S + +
Sbjct: 618  ---------------EYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFK 662

Query: 721  KKPNWLMAAELVETTKLFARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQV 780
            K P W+M AELVET++L+ R+ A+I+P+W+EP+A HLIK+ + EPHWE+ +G V+A E+V
Sbjct: 663  KPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKV 722

Query: 781  TLYGMIVVGRRPVHYGPIDPPAARELFIREGLVRGEINSRARALSANRELLERLDELEAK 840
            T+YG+ +V  R V+Y  IDP   RELFIR  LV G+  +R      N +L   ++ELE K
Sbjct: 723  TVYGLPIVAARKVNYSQIDPVLCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHK 782

Query: 841  ARRRDILADEETLFDYYDARLPADIYQTASFENWYKRESAKNPQLLIMREEDVLAREASE 900
            +RRRDIL D+ETLF++YD R+  D+     F++W+K+ S + P LL   +  ++   A +
Sbjct: 783  SRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEK 842

Query: 901  VTAAQYPDYLRIGELQLPLEYHFEPNHPRDGVTLRVPAPLLPQLRSERLDWLVPGLLETK 960
            ++   YP++   G L+L L Y FEP    DGVT+ +P PLL Q+     +W +PGL    
Sbjct: 843  ISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRREL 902

Query: 961  AVALVRNLPKALRKNFVPVPDFVGAALARIAFGEGSLPEALGRELLRMTGARVSDDAWAE 1020
             +AL+++LPK +R+NFVP P++  A L R+   E  L ++L REL RMTG  V  + W  
Sbjct: 903  VIALIKSLPKPVRRNFVPAPNYAEAFLGRVTPLELPLLDSLERELRRMTGVTVDREDWHW 962

Query: 1021 AAAGLESHLKMNIEVVDARGKFLGEGRDLAEL-TARFAEASQAALAPPQQKAEQKPVEAK 1079
                +  HLK+   VVD + K L EGR L +L  A   +  +   A      EQ  +   
Sbjct: 963  DQ--VPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIW 1020

Query: 1080 GFAQVAEKAQAKMAGLSMTVYPALVEEAGVVKEGRFPTQAEAEWQHRRALQRLLLQQLAE 1139
             F Q+ E  + K     +  +PALV+E   V    F    E +      L+RLLL  +  
Sbjct: 1021 SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS 1080

Query: 1140 PAKYLRNKLPGLTELGLLYRDMGKVDALVEDILLASLDSCILDGEAQLPRDGAALASLAE 1199
            P KYL  KLP   +LGL +   GKV  L++D +   +D  ++D            A+L E
Sbjct: 1081 PIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDK-LIDANGGPVWTEEGFAALHE 1139

Query: 1200 RKRGDWTAHAERLARLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKAQLGNLVYPGFVR 1259
            + R +       +A+   +IL     + KR KG++D+  A+ L+DIKAQ+G LVY GFV 
Sbjct: 1140 KVRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVT 1199

Query: 1260 ETPAEWLKEYPRYLKAIEQRFEKIGAQLQRDRVWSGELAGYWEQYQTRLNKHLQEGKRDA 1319
                + L +  RYL+AIE+R EK+     RDR    ++    + +Q  +NK     + D 
Sbjct: 1200 GNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDE 1259

Query: 1320 ELALYRWMLEEYRVSLWAQQLGTRMAVSDKRLNKQWSQV 1358
            ++   RWM+EE RVS +AQQLGT   +SDKR+ +   Q+
Sbjct: 1260 DVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQI 1298