Pairwise Alignments

Query, 1360 a.a., ATP-dependent helicase HrpA from Pseudomonas stutzeri RCH2

Subject, 809 a.a., putative ATP-dependent helicase from Escherichia coli BL21

 Score =  254 bits (648), Expect = 3e-71
 Identities = 172/499 (34%), Positives = 265/499 (53%), Gaps = 23/499 (4%)

Query: 71  SLPIAAKRDEIKAALEKHQVLVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQPRRLAA 130
           SLP+AA   E+  AL+    ++++  TG+GK+T LP + L    G++G I   +PRRLAA
Sbjct: 3   SLPVAAVLPELLTALDCAPQILLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRRLAA 61

Query: 131 RSVATRVAEEIGTPLGELVGYQVRFEDQSKDSSLIKLMTDGILLAETQHDRFLERYDTII 190
           R+VA R+AE +    G+ VGY++R ++    ++ ++++T+G+L    Q D  L     +I
Sbjct: 62  RNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVI 121

Query: 191 VDEAHERSLNIDFLLGFLKTLLPR-RPDLKVIITSATIDLQRFSEHFDGAPIVEVSGRTY 249
           +DE HERSL  D  L  L  +    R DLK++I SAT+D  R  +    AP+V   GR++
Sbjct: 122 LDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSF 181

Query: 250 PVETWYRPLAAEIDEDGNRVEDDLTVDQGILAALDEITAHEQSVGKRPGDVLVFLPGERE 309
           PVE  Y PL A               D+ +  A  E+   E       G +L+FLPG  E
Sbjct: 182 PVERHYLPLPAH-----------QRFDEAVAVATAEMLRQES------GSLLLFLPGVGE 224

Query: 310 IRDAAEVLRKANLKFTEVLPLYARLTPAEQQKIFQPRPG--RKIVLATNVAETSLTVPGI 367
           I+   E L         + PLY  L+  +Q+K   P P   RK+VLATN+AETSLT+ GI
Sbjct: 225 IQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGI 284

Query: 368 RYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSEEDFLGR 427
           R V+D    R++R+  R  + RL  + VSQAS  QR GR GR+EPGIC+ L ++E     
Sbjct: 285 RLVVDCAQERVARFEPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERS 344

Query: 428 PEFTDPEILRTNLAAVILQMLHLRLGDIQDFPFIEPPDGKAISDGFNLLQELSAVNRENQ 487
              ++PEIL+++L+ +++++L     D     +++ P    +     LLQ L A++ E +
Sbjct: 345 AAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLMAAKRLLQMLGALDGE-R 403

Query: 488 LTPMGRQLARLPIDPRLGRMLLEAAQQGSLAEVLIVASALSVQDVRERPADRQQAADQAH 547
           L+  G+++A L  DPRL  ML+ A      A    +A+ L  +  R   +D   A  +  
Sbjct: 404 LSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILE-EPPRMGNSDLGVAFSRNQ 462

Query: 548 AQWKDPDSDFAALINLWRG 566
             W+         +N+  G
Sbjct: 463 PAWQQRSQQLLKRLNVRGG 481