Pairwise Alignments

Query, 335 a.a., type VI secretion protein, VC_A0111 family from Pseudomonas stutzeri RCH2

Subject, 334 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 72/270 (26%), Positives = 120/270 (44%), Gaps = 14/270 (5%)

Query: 71  FLQEHGEWRARLRINLVSLFGAGSPLPAFYGEQALGDSEDGNPT-RDFLDLFNNRLQRLL 129
           F Q+ G   A L+     + G    LP  YGE    +  + +     F +LF  R   L 
Sbjct: 59  FNQKRGH--AELKSAFAPIVGPLGSLPPAYGELLQREERNRSAALASFFNLFAARFSELF 116

Query: 130 LPIWQKYRYRARFTSGAHDP---FSEQLFALVGLSGEAIRNAPELNWKRLLPYLGLLSLR 186
           +   +KYR        A +    F + L AL G     +     +    LL + GLL+ R
Sbjct: 117 VAATEKYRLARGLRWSAREQDNGFRKTLLALTGFRTTGLAQKAGVAEDTLLRFSGLLASR 176

Query: 187 AHSAALIESVLRYYFKHAELNIEQCLERQVEILGEQRNRLGQANS-QLGESLVLGERVRD 245
             + + + S+L   F    + +EQ   R V +   ++++LGQA+  +LG++   G  V D
Sbjct: 177 NRNVSALTSML-CEFTALPVTVEQFRRRWVALPLHEQSQLGQASGLRLGQNTTAGSAVED 235

Query: 246 RGGKFRIHIRQLDWNRFHEFLPIGSGYQPLCALVRFTLRDPLDYDLRLELRPDEIRELRI 305
             G FR+ I  + +  +    P       + AL R  +   L +D+++ L+ ++I   R+
Sbjct: 236 MSGGFRVVIGPVGYADYLALTPGSKRLAEIFALTRLFVGSALHFDVQVILKKEDIPFCRL 295

Query: 306 G-ADNNCRLGWTSW-----LGRERADGLVT 329
           G +D   RLGW SW       ++ AD +VT
Sbjct: 296 GQSDAPARLGWNSWARVAPAEKDSADAVVT 325