Pairwise Alignments

Query, 505 a.a., Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains from Pseudomonas stutzeri RCH2

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Magnetospirillum magneticum AMB-1

 Score =  261 bits (666), Expect = 5e-74
 Identities = 159/363 (43%), Positives = 213/363 (58%), Gaps = 26/363 (7%)

Query: 167 GLTQLHLLQRLRAPGST---TPPAAPVSPCASGYGLIG------------DSPRMRAVYQ 211
           G  +L+ LQR  A  S     PPAA     A   G +             DSP +  V +
Sbjct: 118 GALKLYSLQRENAQASLDLKVPPAALERSIARKTGTLKRQHHFDGIIHAPDSP-LTEVIE 176

Query: 212 LIGKVLHSPVNVLLTGETGTGKELVARAIHDCGFRRSKPFVVQNCASLPEQLLESELFGY 271
           +  KV    ++VL+TGE+GTGKEL+ARAIH    R +KPFVV+NC +LP+QLLESELFG 
Sbjct: 177 MARKVSSFDISVLITGESGTGKELLARAIHYNSPRGNKPFVVENCGALPDQLLESELFGC 236

Query: 272 RKGAFTGADRDRSGLLDAANGGTLFLDEIGDMPLLLQAKLLRVLQEGEVRPLGSTETHKV 331
           +KGAFTGA  DR GL + A+GGT+FLDEIG+     Q KLLRVLQEGE+RPLG+  T KV
Sbjct: 237 KKGAFTGAYEDRIGLFEQASGGTIFLDEIGETSPAFQVKLLRVLQEGEIRPLGARLTRKV 296

Query: 332 DVRIVAATHRDLRSQVENGLFREDLFYRLSHFPIELPPLRERDEDILRLARHFADKACAF 391
           DVR++AAT+R+L  +V    FR DLFYRL+ FPI LPPLRER  D+  LA     +    
Sbjct: 297 DVRVIAATNRNLEEEVREKHFRRDLFYRLAAFPIHLPPLRERPMDVPLLAERLLGETGKG 356

Query: 392 LQRDLCRWSDAALERLAGYAFPGNVRELKGLVERAVLLCEGGELLPEHLNLHVEASL--- 448
             R   R+   A+ ++ GY +PGNVREL+  ++R V L E   L P+ L+  + A +   
Sbjct: 357 FGRPNLRFGPEAMAQMRGYDWPGNVRELQNEIQRMVALAEHAVLSPDLLSPRLRARICPA 416

Query: 449 -------DSSLNLRERMERVERSLLMDCLRKNGGNQSQAARELGLPRRTLLYRMERLNIS 501
                       L+E++E +E  LL + L ++  N ++ A E GL R  L  ++ R  + 
Sbjct: 417 GRALADQGEPATLKEQVEMLEARLLAESLGRHRWNITRVAEETGLSRVGLRAKLRRYGLE 476

Query: 502 PAD 504
             D
Sbjct: 477 RED 479